| 423 matches found in 290 documents. Search time: 0.008 seconds. |
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Score: 9.00 |
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| Title: Mechanism underlying regulated expression of RFL , a conserved transcription factor , in the developing rice inflorescence .
| | Author: Prasad K Kushalappa K Vijayraghavan U | | Journal: Mech . Dev . Citation: V : 120 ( 4 ) P : 491-502 Year: 2003 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12676326 Accession (PMID): 12676326 | Matching Sentences:
[ Sen. 10, subscore: 2.00 ]: By sequence comparison of RFL upstream sequences , intron1 , intron2 and the Arabidopsis LFY promoter , we identify putative cis-regulatory elements unique to RFL .
[ Sen. 2, subscore: 1.00 ]: The spatial and temporal RNA expression pattern of a rice LFY-like gene : RFL differs significantly from that in several other species studied thus far .
[ Sen. 3, subscore: 1.00 ]: The onset of RFL expression coincides with inflorescence meristem ( panicle meristem ) initiation , and continues during panicle branching .
[ Sen. 5, subscore: 1.00 ]: To explore mechanisms underlying this distinct expression pattern , we have tested the transcription regulatory functions of sequences upstream to RFL coding sequences either alone , or together with intragenic segments .
[ Sen. 6, subscore: 1.00 ]: Sequences 3 . 0 kb upstream of the RFL reading frame do not confer correctly regulated reporter gene expression in transgenic rice .
[ Sen. 7, subscore: 1.00 ]: In contrast , RFL intron1 or 2 can individually confer the expected profile in the developing panicle and floret .
[ Sen. 9, subscore: 1.00 ]: Strikingly , RFL intron2 sequences can even utilize the Arabidopsis thaliana LFY promoter to confer regulated transcription in young rice panicles .
[ Sen. 11, subscore: 1.00 ]: These data exemplify the use of regulatory circuits specific to rice RFL that may underlie its divergent function .
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Score: 9.00 |
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| Title: Distinct regulatory role for RFL , the rice LFY homolog , in determining flowering time and plant architecture .
| | Author: Rao NN Prasad K Kumar PR Vijayraghavan U | | Journal: Proc Natl Acad Sci U S A Citation: V : 105 P : 3646-51 Year: 2008 Type: MEDLINE | | Literature: oryza Field: abstract Doc ID: pub18305171 Accession (PMID): 18305171 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: In Arabidopsis thaliana , a model eudicot species , the transcription factor LFY confers a floral fate to new meristems arising from the periphery of the reproductive shoot apex Diverse orthologous LFY genes regulate vegetative-to-reproductive phase transition when expressed in Arabidopsis , a property not shared by RFL , the homolog in the agronomically important grass , rice .
[ Sen. 3, subscore: 1.00 ]: We have characterized RFL by knockdown of its expression and by its ectopic overexpression in transgenic rice .
[ Sen. 4, subscore: 1.00 ]: We find that reduction in RFL expression causes a dramatic delay in transition to flowering , with the extreme phenotype being no flowering .
[ Sen. 5, subscore: 1.00 ]: Conversely , RFL overexpression triggers precocious flowering .
[ Sen. 6, subscore: 1.00 ]: In these transgenics , the expression levels of known flowering time genes reveal RFL as a regulator of OsSOC1 ( OsMADS50 ) , an activator of flowering .
[ Sen. 7, subscore: 1.00 ]: Aside from facilitating a transition of the main growth axis to an inflorescence meristem , RFL expression status affects vegetative axillary meristems and therefore regulates tillering .
[ Sen. 8, subscore: 1.00 ]: The unique spatially and temporally regulated RFL expression during the development of vegetative axillary bud ( tiller ) primordia and inflorescence branch primordia is therefore required to produce tillers and panicle branches , respectively .
[ Sen. 9, subscore: 1.00 ]: Our data provide mechanistic insights into a unique role for RFL in determining the typical rice plant architecture by regulating distinct downstream pathways .
[ Sen. 10, subscore: 1.00 ]: These results offer a means to alter rice flowering time and plant architecture by manipulating RFL-mediated pathways .
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Score: 9.00 |
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| Title: Down-regulation of RFL , the FLO/LFY homolog of rice , accompanied with panicle branch initiation .
| | Author: Kyozuka J Konishi S Nemoto K Izawa T Shimamoto K | | Journal: Proc . Natl . Acad . Sci . USA Citation: V : 95 ( 5 ) P : 1979-82 Year: 1998 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub9482818 Accession (PMID): 9482818 | Matching Sentences:
[ Sen. 7, subscore: 2.00 ]: Expression pattern of RFL raised a possibility that , unlike FLO and LFY , RFL might be involved in panicle branching .
[ Sen. 2, subscore: 1.00 ]: To examine whether same mechanisms control floral development in distantly related species such as grasses , we isolated RFL , FLO-LFY homolog of rice , and examined its expression and function .
[ Sen. 3, subscore: 1.00 ]: Northern analysis showed that RFL is expressed predominantly in very young panicle but not in mature florets , mature leaves , or roots .
[ Sen. 4, subscore: 1.00 ]: In situ hybridization revealed that RFL RNA was expressed in epidermal cells in young leaves at vegetative growth stage .
[ Sen. 5, subscore: 1.00 ]: After the transition to reproductive stage , RFL RNA was detected in all layers of very young panicle including the apical meristem , but absent in the incipient primary branches .
[ Sen. 6, subscore: 1.00 ]: As development of branches proceeds , RFL RNA accumulation localized in the developing branches except for the apical meristems of the branches and secondary branch primordia .
[ Sen. 8, subscore: 1.00 ]: Transgenic Arabidopsis plants constitutively expressing RFL from the cauliflower mosaic virus 35S promoter were produced to test whether 35S-RFL would cause similar phenotype as observed in 35S-LFY plants .
[ Sen. 10, subscore: 1.00 ]: Instead , development of cotyledons , rosette leaves , petals , and stamens was severely affected , demonstrating that RFL function is distinct from that of LFY .
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Score: 7.00 |
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| Title: Restriction fragment length polymorphism analysis of CCDD genome species of the genus Oryza L | | Author: Jena KK Kochert G | | Journal: Plant Mol . Biol . Citation: V : 16 ( 5 ) P : 831-9 Year: 1991 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub1677594 Accession (PMID): 1677594 | Matching Sentences:
[ Sen. 6, subscore: 2.00 ]: By comparing RFLPs from the allotetraploids with those from a CC genome diploid wild species ( O officinalis ) , it was possible to detect RFLPs specific for both the CC and DD genomes of the allotetraploid .
[ Sen. 1, subscore: 1.00 ]: Restriction fragment length polymorphisms ( RFLPs ) were studied in fourteen accessions of CCDD genome allotetraploid wild rice species ( Oryza latifolia , O alta and O grandiglumis ) .
[ Sen. 2, subscore: 1.00 ]: Fourteen nuclear RFLP markers previously mapped in AA genome-cultivated rice were used as probes .
[ Sen. 3, subscore: 1.00 ]: A phylogenetic tree , constructed by parsimony analysis based on RFLPs , grouped the accessions according to their geographic origin from Central or South America .
[ Sen. 5, subscore: 1.00 ]: Duplicate loci , representing the two constituent genomes of the allotetraploid , were observed for most RFLP markers .
[ Sen. 7, subscore: 1.00 ]: In inter-accession F2 populations , independent segregation of RFLP markers for CC and DD genomes was observed .
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Score: 6.00 |
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| Title: Assessment of genetic diversity and population structure of Xanthomonas oryzae pv . oryzae with a repetitive DNA element .
| | Author: Leach JE Rhoads ML Vera Cruz CM White FF Mew TW Leung H | | Journal: Appl . Environ . Microbiol . Citation: V : 58 ( 7 ) P : 2188-95 Year: 1992 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub1353345 Accession (PMID): 1353345 | Matching Sentences:
[ Sen. 3, subscore: 2.00 ]: Twenty-seven RFLP types were identified ; there was no overlap of RFLP types among the six races from the Philippines .
[ Sen. 2, subscore: 1.00 ]: Genomic DNA from X oryzae pv . oryzae was digested with EcoRI and analyzed for restriction fragment length polymorphisms ( RFLPs ) with repetitive DNA element as a probe .
[ Sen. 4, subscore: 1.00 ]: Most variability ( 20 RFLP types ) was found in strains of races 1 , 2 , and 3 , which were isolated from tropical lowland areas .
[ Sen. 5, subscore: 1.00 ]: Four RFLP types ( all race 5 ) were found among strains isolated from cultivars grown in the temperate highlands .
[ Sen. 8, subscore: 1.00 ]: Cluster analysis based on RFLP banding patterns showed five groupings at 85% similarity .
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Score: 5.00 |
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| Title: Phylogenetic relationships in the genus Oryza based on mitochondrial RFLPs .
| | Author: Abe T Edanami T Adachi E Sasahara T | | Journal: Genes Genet .
Syst Citation: V : 74 ( 1 ) P : 23-7 Year: 1999 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10549129 Accession (PMID): 10549129 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Restriction fragment length polymorphism ( RFLP ) of mitochondrial DNA in the genus Oryza was surveyed using 20 accessions including 11 species and a single endonuclease , EcoRI .
[ Sen. 2, subscore: 1.00 ]: RFLPs were visualized by Southern hybridization with eight rice mitochondrial DNA probes labeled non-radioactively with digoxigenin-dUTP .
[ Sen. 5, subscore: 1.00 ]: The extent of the polymorphism in the RFLP patterns was various depending on the probes used .
[ Sen. 10, subscore: 1.00 ]: Even in O sativa species , the RFLP patterns of japonica and indica subspecies were clearly different from each other when three probes were used .
[ Sen. 12, subscore: 1.00 ]: Within the genomes of B , BC , C , and CD , RFLP patterns were similar to each other and they showed a closer affinity except for O minuta ( BBCC ) .
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Score: 5.00 |
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| Title: Partial conservation of LFY function between rice and Arabidopsis .
| | Author: Chujo A Zhang Z Kishino H Shimamoto K Kyozuka J | | Journal: Plant Cell Physiol .
Citation: V : 44 ( 12 ) P : 1311-9 Year: 2003 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub14701926 Accession (PMID): 14701926 | Matching Sentences:
[ Sen. 6, subscore: 2.00 ]: The RFL gene driven by LFY promoter partially rescued the lfy mutation , suggesting that the functions of LFY and RFL partly overlap .
[ Sen. 5, subscore: 1.00 ]: To test whether grass LFY/FLO genes have a conserved function with those of eudicots , we introduced RFL , a rice LFY homolog , into the Arabidopsis lfy mutant .
[ Sen. 7, subscore: 1.00 ]: Interestingly , the RFL but not LFY , strongly activated the expression of AP1 and AG , the downstream targets of LFY , even in the vegetative it issues .
[ Sen. 8, subscore: 1.00 ]: The LFY : : RFL transgenic Arabidopsis plants exhibited abnormal patterns of development such as leaf curling , bushy appearance and the transformation of ovules into carpels .
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Score: 4.00 |
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| Title: High levels of gene flow and heterozygote excess characterize Rhizoctonia solani AG-1 IA ( Thanatephorus cucumeris ) from Texas .
| | Author: Rosewich UL Pettway RE McDonald BA Kistler HC .
| | Journal: Fungal Genet . Biol . Citation: V : 28 ( 3 ) P : 148-59 Year: 1999 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10669581 Accession (PMID): 10669581 | Matching Sentences:
[ Sen. 3, subscore: 1.00 ]: Seven single-copy nuclear RFLP markers were used to examine 182 isolates of Rhizoctonia solani AG-1 IA collected from six commercial rice fields in Texas .
[ Sen. 4, subscore: 1.00 ]: Thirty-six multilocus RFLP genotypes were identified .
[ Sen. 6, subscore: 1.00 ]: Tests for Hardy-Weinberg equilibrium ( HWE ) among the 36 multilocus RFLP genotypes revealed that four of the seven loci did not significantly differ from HWE .
[ Sen. 9, subscore: 1.00 ]: Possible explanations for heterozygote excess , which was observed at all seven RFLP loci , are discussed .
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Score: 4.00 |
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| Title: Comparison of population genetic structures of common wild rice ( Oryza rufipogon Griff . ) , as revealed by analyses of quantitative traits , allozymes , and RFLPs .
| | Author: Cai HW Wang XK Morishima H | | Journal: Heredity Citation: V : 92 ( 5 ) P : 409-17 Year: 2004 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub14997180 Accession (PMID): 14997180 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: We investigated genetic diversity among and within natural populations of Asian common wild rice , Oryza rufipogon , from three different classes of data : quantitative traits , allozymes , and restriction fragment length polymorphisms ( RFLPs ) .
[ Sen. 5, subscore: 1.00 ]: Quantitative traits revealed ecotype differentiation into perennial and annual types of population , whereas allozyme and RFLP analyses revealed geographical differentiation among populations .
[ Sen. 6, subscore: 1.00 ]: These results suggest that the diversity patterns shown by quantitative trait analysis reflect mainly the occurrence of adaptive differentiation in response to habitat conditions and that those shown by allozyme and RFLP analyses reflect mainly the effect of isolation by distance .
[ Sen. 7, subscore: 1.00 ]: Population differentiation parameters ( F ( ST ) ) were highly variable among loci in allozymes as well as in RFLPs .
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Score: 4.00 |
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| Title: Avirulence gene and insertion element-based RFLP as well as RAPD markers reveal high levels of genomic polymorphism in the rice pathogen Xanthomonas oryzae pv . oryzae .
| | Author: Hu J Zhang Y Qian W He C | | Journal: Syst Appl Microbiol Citation: V : 30 P : 587-600 Year: 2007 Type: MEDLINE | | Literature: oryza Field: abstract Doc ID: pub17959329 Accession (PMID): 17959329 | Matching Sentences:
[ Sen. 2, subscore: 2.00 ]: To investigate the level of genetic variation in Xanthomonas oryzae pv . oryzae ( Xoo ) , the causative agent of rice bacterial blight disease , three DNA marker systems , including ( i ) restriction fragment length polymorphism ( RFLP ) of the avrBs3/PthA family genes ( avrXa27 ) , ( ii ) RFLP of insertion ( IS ) elements and ( iii ) random amplified polymorphic DNA ( RAPD ) markers , were used to detect polymorphism among 32 Xoo strains that differed in their virulence patterns .
[ Sen. 4, subscore: 1.00 ]: RFLP of six IS elements revealed that these mobile sequences were abundant in Xoo genomes , with 150 of the total of 165 discernable markers being variable .
[ Sen. 6, subscore: 1.00 ]: In addition , analysis of molecular variance ( AMOVA ) of data from RFLP analysis of IS elements and from RAPD analysis showed that most of the genetic variation residues were within Xoo populations , rather than between populations .
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Score: 4.00 |
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| Title: Genetic and physical mapping of telomeres and macrosatellites of rice .
| | Author: Wu KS Tanksley SD .
| | Journal: Plant Mol . Biol . Citation: V : 22 ( 5 ) P : 861-72 Year: 1993 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub8102907 Accession (PMID): 8102907 | Matching Sentences:
[ Sen. 9, subscore: 2.00 ]: The physical distance from telomeric sequences to a distal RFLP marker , r45s gene , on chromosome 9 , is 200 kb while the distance from telomeric sequences to RG98 , a terminal RFLP marker on chromosome 11 , is 260 kb .
[ Sen. 6, subscore: 1.00 ]: Three such telomeric bands have been mapped to the distal ends of RFLP linkage groups : Telsm-1 on chromosome 8 , Telsa-1 on chromosome 9 and Telsm-3 on chromosome 11 .
[ Sen. 8, subscore: 1.00 ]: Telomeric fragments were shown not only to be genetically linked to but also physically linked ( based on PFGE ) to the terminal RFLP markers .
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Score: 4.00 |
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| Title: Physical mapping of the liguleless linkage group in Sorghum bicolor using rice RFLP-selected sorghum BACs .
| | Author: Zwick MS Islam-Faridi MN Czeschin DG Wing RA Hart GE Stelly DM Price HJ .
| | Journal: Genetics Citation: V : 148 ( 4 ) P : 1983-92 Year: 1998 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub9560411 Accession (PMID): 9560411 | Matching Sentences:
[ Sen. 6, subscore: 2.00 ]: Selected BACs , representing RFLP loci , were end-cloned for RFLP mapping , and the relative linkage order of these clones was in full agreement with the physical data .
[ Sen. 2, subscore: 1.00 ]: Six liguleless-associated rice restriction fragment length polymorphism ( RFLP ) markers were used to select 16 homeologous sorghum BACs , which were in turn used to physically map the liguleless linkage group in sorghum .
[ Sen. 7, subscore: 1.00 ]: Similarities in locus order and the association of RFLP-selected BAC markers with two different chromosomes were found to exist between the linkage map of the liguleless region in maize and the physical map of the liguleless region in sorghum .
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Score: 3.00 |
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| Title: Mapping of avirulence genes in the rice blast fungus , Magnaporthe grisea , with RFLP and RAPD markers .
| | Author: Dioh W Tharreau D Notteghem JL Orbach M Lebrun MH .
| | Journal: Mol .
Plant Microbe Interact .
Citation: V : 13 ( 2 ) P : 217-27 Year: 2000 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10659712 Accession (PMID): 10659712 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: Using 76 random progeny , we constructed a partial genetic map with restriction fragment length polymorphism ( RFLP ) markers revealed by probes such as the repeated sequences MGL/MGR583 and Pot3/MGR586 , cosmids from the M grisea genetic map , and a telomere sequence oligonucleotide .
[ Sen. 3, subscore: 1.00 ]: Avirulence genes AVR1-MedNoi and AVR1-Ku86 were closely linked to telomere RFLPs such as marker TelG ( 6 cM from AVR1-MedNoi ) and TelF ( 4 . 5 cM from AVR1-Ku86 ) .
[ Sen. 4, subscore: 1.00 ]: Avirulence gene AVR1-Irat7 was linked to a cosmid RFLP located on chromosome 1 and mapped at 20 cM from the avirulence gene AVR1-CO39 .
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Score: 3.00 |
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| Title: Identification of YAC clones containing the mutable slender glume locus slg in rice ( Oryza sativa L ) .
| | Author: Teraishi M Hirochika H Okumoto Y Horibata A Yamagata H Tanisaka T | | Journal: Genome Citation: V : 44 ( 1 ) P : 1-6 Year: 2001 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11269342 Accession (PMID): 11269342 | Matching Sentences:
[ Sen. 3, subscore: 2.00 ]: The RFLP ( restriction fragment length polymorphism ) analysis revealed that the slg locus was located between two RFLP loci , XNpb33 and R1440 , on chromosome 7 with recombination values of 3 . 1% and 1 . 0% , respectively .
[ Sen. 4, subscore: 1.00 ]: Using these two RFLP loci as probes , five YAC ( yeast artificial chromosome ) clones containing either of these two loci were selected from a YAC library .
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Score: 3.00 |
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| Title: RAPD , RFLP and SSLP analyses of phylogenetic relationships between cultivated and wild species of rice .
| | Author: Bautista NS Solis R Kamijima O Ishii T | | Journal: Genes Genet .
Syst Citation: V : 76 ( 2 ) P : 71-9 Year: 2001 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11434461 Accession (PMID): 11434461 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: RAPD , RFLP , nuclear SSLP and chloroplast SSLP analyses were carried out to clarify the phylogenetic relationships among A-genome species of rice .
[ Sen. 9, subscore: 1.00 ]: In addition , dendrograms for RAPD , RFLP , and nuclear and chloroplast SSLP analyses were constructed to reveal the overall genetic relationships among A-genome species .
[ Sen. 12, subscore: 1.00 ]: The results of RAPD and RFLP analyses indicate that O glumaepatula was relatively close to the groups of O sativa and O glaberrima whereas O longistaminata and O meridionalis were highly differentiated from other A-genome species .
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Score: 3.00 |
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| Title: [ The comparison of genetic divergences and its relationships to heterosis revealed by SSR and RFLP markers in rice ( Oryza sativa L ) ] | | Author: Zhu ZF Sun CQ Jiang TB Fu Q Wang XK .
| | Journal: Yi Chuan Xue Bao Citation: V : 28 ( 8 ) P : 738-45 Year: 2001 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11554348 Accession (PMID): 11554348 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Genetic divergences of 57 entries from 6 ecotypes of rice were surveyed by PCR analysis with 48 pairs of SSR and by Southern analysis by 50 RFLP probes .
[ Sen. 2, subscore: 1.00 ]: It was indicated that SSR markers detected polymorphism efficiently in comparison to RFLP markers , considering the allele numbers per locus and average gene diversity .
[ Sen. 3, subscore: 1.00 ]: Among all of 1 , 596 pairs , 1 , 452 pairs of genetic distances based on SSR data ( GDSSR ) were higher than the genetic distance based on RFLP data ( GDRFLP ) by average of 0 . 2492 .
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Score: 3.00 |
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| Title: Mapping of quantitative trait locus related to submergence tolerance in rice with aid of chromosome walking .
| | Author: Kamolsukyunyong W Ruanjaichon V Siangliw M Kawasaki S Sasaki T Vanavichit A Tragoonrung S | | Journal: DNA Res .
Citation: V : 8 ( 4 ) P : 163-71 Year: 2001 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11572482 Accession (PMID): 11572482 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: The major QTL for submergence tolerance was locate in the 5 . 9 cM interval between flanking RFLP markers .
[ Sen. 5, subscore: 1.00 ]: Using one YAC end , six BAC ends and three RFLP markers , a fine-scale map was constructed of the 6 . 8-cM interval of S10709-RZ698 on rice chromosome 9 .
[ Sen. 6, subscore: 1.00 ]: The submergence tolerance and related trait were located in a small , well-defined region around BAC-end marker 180D1R and RFLP marker R1164 .
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Score: 3.00 |
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| Title: [ Identification of quantitative trait loci controlling F2 sterility and heading date in rice ] | | Author: Wang CM Yasui H Yoshimura A Wan JM Zhai HQ .
| | Journal: Yi Chuan Xue Bao Citation: V : 29 ( 4 ) P : 339-42 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11985268 Accession (PMID): 11985268 | Matching Sentences:
[ Sen. 3, subscore: 2.00 ]: The RFLP map contained 94 RFLP makers .
[ Sen. 2, subscore: 1.00 ]: At the first step , an RFLP linkage map based on the F2 lines was constructed .
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Score: 3.00 |
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| Title: An AFLP marker tightly linked to apomixis reveals hemizygosity in a portion of the apomixis-controlling locus in Paspalum simplex | | Author: Labombarda P Busti A Caceres ME Pupilli F Arcioni S | | Journal: Genome Citation: V : 45 ( 3 ) P : 513-9 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12033620 Accession (PMID): 12033620 | Matching Sentences:
[ Sen. 4, subscore: 1.00 ]: Integrating the AFLP data with those obtained previously with rice RFLP anchor markers , a map was drawn for the chromosome region of P simplex encompassing apomixis .
[ Sen. 6, subscore: 1.00 ]: Two of them revealed RFLP bands linked to apomixis together with other alleles , whereas one was proven to belong to a hemizygous portion of the apomixis locus .
[ Sen. 7, subscore: 1.00 ]: The total picture resulting from AFLP and RFLP analyses was that a cluster of markers tightly linked with apomixis was detected in P simplex together with two other markers that were more loosely linked .
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Score: 3.00 |
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| Title: Genetic and physical mapping of a rice blast resistance locus , Pi-CO39 ( t ) , that corresponds to the avirulence gene AVR1-CO39 of Magnaporthe grisea .
| | Author: Chauhan RS Farman ML Zhang HB Leong SA .
| | Journal: Mol . Genet . Genomics Citation: V : 267 ( 5 ) P : 603-12 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12172799 Accession (PMID): 12172799 | Matching Sentences:
[ Sen. 5, subscore: 2.00 ]: Microsatellite , RFLP and resistance gene analog ( RGA ) markers were used to map the Pi-CO39 ( t ) locus to a 1 . 2-cM interval between the probenazole-responsive ( RPR1 ) gene ( 0 . 2 cM ) and RFLP marker S2712 ( 1 . 0 cM ) on the short arm of rice chromosome 11 .
[ Sen. 6, subscore: 1.00 ]: RFLP markers G320 and F5003 , and resistance gene analogs RGA8 , RGA38 and RGACO39 were tightly linked to the Pi-CO39 ( t ) locus ( no recombination detected in a sample of 2400 gametes ) .
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Score: 3.00 |
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| Title: Molecular mapping and genetic analysis of a rice brown planthopper ( Nilaparvata lugens Stl ) resistance gene .
| | Author: Yang H Ren X Weng Q Zhu L He G | | Journal: Hereditas Citation: V : 136 ( 1 ) P : 39-43 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12184487 Accession (PMID): 12184487 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: We have determined the chromosomal location of a BPH resistance gene in rice using SSR and RFLP techniques .
[ Sen. 9, subscore: 1.00 ]: Regions surrounding the resistance gene and the SSR markers were examined with additional RFLP markers on chromosome 4 to define the location of the resistance gene .
[ Sen. 10, subscore: 1.00 ]: Linkage of RFLP markers C820 , R288 , C946 with the resistance gene further confirmed its location on the short arm of chromosome 4 .
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Score: 3.00 |
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| Title: [ Chromosome mapping of the S-b locus for F1 pollen sterility in cultivated rice ( Oryza sativa L ) with RAPD markers ] | | Author: Zhuang CX Mei MT Zhang GQ Lu YG .
| | Journal: Yi Chuan Xue Bao Citation: V : 29 ( 8 ) P : 700-5 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12200861 Accession (PMID): 12200861 | Matching Sentences:
[ Sen. 6, subscore: 1.00 ]: A total of 187 RFLP markers and 500 RAPD primers were used to screen the polymorphism between T65 and TISL2 ; only H08-1300 and Y09-1500 , two bands amplified by RAPD primer H08 and Y09 were found to be polymorphic .
[ Sen. 7, subscore: 1.00 ]: Purified H08-1300 and Y09-1500 were used as probe to hybridize with DNAs from T65 and TISL2 , and the results indicated that H08-1300 and Y09-1500 appeared to be single copy in the T65 and TISL2 genome , then the RAPD marker were successfully converted into RFLP marker .
[ Sen. 11, subscore: 1.00 ]: Clone P0033D06 had been anchored by RFLP markers R3166 that was located on 18 . 8 cM position of rice chromosome 5 by Japan Rice Genome Program , which suggested that the S-b locus was mapped on chromosome 5 and tightly linked with R3166 .
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Score: 3.00 |
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| Title: Genetic basis of hybrid breakdown in a Japonica/Indica cross of rice , Oryza sativa L | | Author: Kubo T Yoshimura A | | Journal: Citation: V : 105 ( 6-7 ) P : 906-911 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12582916 Accession (PMID): 12582916 | Matching Sentences:
[ Sen. 7, subscore: 2.00 ]: Based on linkage analysis with RFLP markers , the hwe1 locus was located between RFLP markers R1869 and S1437 on chromosome 12 and the hwe2 locus was located between R3192 and C1211 on chromosome 1 .
[ Sen. 3, subscore: 1.00 ]: We employed RFLP analysis in the segregating population to study the genetic basis underlying hybrid breakdown .
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Score: 3.00 |
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| Title: [ Molecular mapping of the fertility restorer gene Rf-4 for WA cytoplasmic male sterility in rice ] | | Author: Zhang QY Liu YG Zhang GQ Mei MT .
| | Journal: Yi Chuan Xue Bao Citation: V : 29 ( 11 ) P : 1001-4 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12645264 Accession (PMID): 12645264 | Matching Sentences:
[ Sen. 4, subscore: 2.00 ]: YAC contigs located between RFLP markers R1877 and G2155 on chromosome 10 were confirmed by hybridization with 12 RFLP probes .
[ Sen. 8, subscore: 1.00 ]: RFLPs were screened between Zhenshan 97A and its near-isogenic lines with Rf-4Rf-4 genotype .
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Score: 3.00 |
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| Title: Genetic Diversity among Xanthomonas campestris Strains Pathogenic for Small Grains .
| | Author: Bragard C Verdier V Maraite H | | Journal: Citation: V : 61 ( 3 ) P : 1020-1026 Year: 1995 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub16534952 Accession (PMID): 16534952 | Matching Sentences:
[ Sen. 4, subscore: 1.00 ]: Corona , indirect immunofluorescence , and restriction fragment length polymorphism ( RFLP ) .
[ Sen. 5, subscore: 1.00 ]: Three probes were used for the RFLP analysis .
[ Sen. 8, subscore: 1.00 ]: Strains of X campestris pv . graminis , X campestris pv . phleipratensis , and X campestris pv . poae are shown to be related but are also distinguishable by RFLP patterns , serology , and pathogenicity on bread wheat .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: Molecular genetic characterization of the Lr34/Yr18 slow rusting resistance gene region in wheat .
| | Author: Lagudah ES McFadden H Singh RP Huerta-Espino J Bariana HS Spielmeyer W | | Journal: Theor . Appl . Genet . Citation: V : 114 ( 1 ) P : 21-30 Year: 2006 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub17008991 Accession (PMID): 17008991 | Matching Sentences:
[ Sen. 4, subscore: 1.00 ]: Extensive RFLP analysis using the wEST derived clones as probes on a panel of wheat genetic stocks with or without Lr34/Yr18 revealed monomorphic patterns as the norm in this region of the wheat genome .
[ Sen. 6, subscore: 1.00 ]: One exception was a wEST derived clone that produced a consistent RFLP pattern that distinguished the Lr34/Yr18 genetic stocks and well-established cultivars known either to possess or lack Lr34/Yr18 .
[ Sen. 7, subscore: 1.00 ]: Conversion of the RFLP to a codominant sequence tagged site ( csLV34 ) revealed a bi-allelic locus , where a variant size of 79 bp insertion in an intron sequence was associated with lines or cultivars that lacked Lr34/Yr18 .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: Correlation exploration of metabolic and genomic diversity in rice .
| | Author: Mochida K Furuta T Ebana K Shinozaki K Kikuchi J | | Journal: BMC Genomics Citation: V : 10 P : 568 Year: 2009 Type: In-Process | | Literature: oryza Field: abstract Doc ID: pub19948071 Accession (PMID): 19948071 | Matching Sentences:
[ Sen. 7, subscore: 1.00 ]: To determine the genomic diversity of the rice genome , we genotyped 128 restriction fragment length polymorphism ( RFLP ) markers to calculate the genetic distance among the accessions .
[ Sen. 9, subscore: 1.00 ]: We found no correlation between global metabolic diversity and the phylogenetic relationships among the rice accessions ( r ( s ) = 0 . 14 ) by analyzing the distance matrices ( calculated from the pattern of the metabolic fingerprint in the 4 . 29 to 0 . 71-ppm ( 1 ) H chemical shift ) and the genetic distance on the basis of the RFLP markers .
[ Sen. 10, subscore: 1.00 ]: However , local correlation analysis between the distance matrices ( derived from each 0 . 04-ppm integral region of the ( 1 ) H chemical shift ) against genetic distance matrices ( derived from sets of 3 adjacent markers along each chromosome ) , generated clear correlations ( r ( s ) > 0 . 4 , p < 0 . 001 ) at 34 RFLP markers .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: Molecular phylogeny based on RFLP and its relation with alkaloid patterns in Lupinus plants .
| | Author: Yamazaki M Sato A Saito K Murakoshi I | | Journal: Biol . Pharm . Bull . Citation: V : 16 ( 11 ) P : 1182-4 Year: 1993 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub7906176 Accession (PMID): 7906176 | Matching Sentences:
[ Sen. 4, subscore: 2.00 ]: The phylogenic tree constructed from RFLP profiles was related with the pattern of alkaloid production , indicating the usefulness of RFLP for DNA characterization of medicinal plants .
[ Sen. 1, subscore: 1.00 ]: The restriction fragment length polymorphisms ( RFLPs ) in genomic DNA were detected among six species of Lupinus plants using rice DNA coding for ribosomal RNA ( rDNA ) as a probe .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: Comparative RFLP mapping of a wild rice , Oryza officinalis , and cultivated rice , O sativa .
| | Author: Jena KK Khush GS Kochert G | | Journal: Genome Citation: V : 37 ( 3 ) P : 382-9 Year: 1994 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub7913453 Accession (PMID): 7913453 | Matching Sentences:
[ Sen. 1, subscore: 2.00 ]: A comparative RFLP map was constructed in a wild rice , Oryza officinalis , by using 139 genomic and cDNA probes that had been used previously to map RFLPs in O sativa .
[ Sen. 4, subscore: 1.00 ]: Fourteen translocated RFLP markers were found , and chromosome 11 contained a high frequency of such translocated segments .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: Comparative RFLP mapping of an allotetraploid wild rice species ( Oryza latifolia ) and cultivated rice ( O sativa ) .
| | Author: Huang H Kochert G | | Journal: Plant Mol . Biol . Citation: V : 25 ( 4 ) P : 633-48 Year: 1994 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub7914758 Accession (PMID): 7914758 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: The purpose of this study was to construct a comparative RFLP map of an allotetraploid wild rice species , Oryza latifolia , and to study the relationship between the CCDD genome of O latifolia and the AA genome of O sativa .
[ Sen. 2, subscore: 1.00 ]: A set of RFLP markers , which had been previously mapped to the AA genome of cultivated rice , were used to construct the comparative map .
[ Sen. 4, subscore: 1.00 ]: The comparative RFLP map contains 149 DNA markers , including 145 genomic DNA markers from cultivated rice , 3 cDNA markers from oat , and one known gene ( waxy , from maize ) .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: PFGE analysis of the rice genome : estimation of fragment sizes , organization of repetitive sequences and relationships between genetic and physical distances .
| | Author: Wu KS Tanksley SD .
| | Journal: Plant Mol . Biol . Citation: V : 23 ( 2 ) P : 243-54 Year: 1993 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub8106011 Accession (PMID): 8106011 | Matching Sentences:
[ Sen. 8, subscore: 2.00 ]: Analysis of a cluster of RFLP markers on chromosome 3 revealed that genetically clustered RFLP markers are also physically closely linked , suggesting that clustering of genetic markers may result in part from uneven distribution of single-copy sequences .
[ Sen. 2, subscore: 1.00 ]: Probing 56 RFLP probes selected from the 12 rice chromosomes to PFGE blots of nine rare-cutting restriction enzymes revealed that there are relatively high numbers of rare-cutting restriction sites in the rice genome .
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Score: 3.00 |
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| Title: Restriction fragment length polymorphisms of rDNA and variation of essential oil composition in Atractylodes plants .
| | Author: Mizukami H Shimizu R Kohda H Kohjyouma M Kawanishi F Hiraoka N | | Journal: Biol . Pharm . Bull . Citation: V : 19 ( 4 ) P : 577-80 Year: 1996 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub8860962 Accession (PMID): 8860962 | Matching Sentences:
[ Sen. 2, subscore: 2.00 ]: The resulting restriction fragment length polymorphism ( RFLP ) profiles allowed us to distinguish the three Atractylodes species when DNA was digested with Sac I Although atractylon was detected in the rhizomes of some of the cultivated strains of A lancea , their RFLP profiles clearly indicate that these plants are not hybrids of A ovata or A japonica .
[ Sen. 3, subscore: 1.00 ]: RFLP analysis also revealed the presence of intraspecific variation in DNA sequence of rRNA locus among A lancea as well as A japonica .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: Molecular mapping and tagging of genes in crop plants .
| | Author: Sharma RP Mohapatra T | | Journal: Genetica Citation: V : 97 ( 3 ) P : 313-20 Year: 1996 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub9081859 Accession (PMID): 9081859 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: In India , molecular mapping and tagging of agronomically important genes using RFLP and RAPD markers have been carried out in three different crops : rice , mustard and chickpea .
[ Sen. 5, subscore: 1.00 ]: In mustard , a partial RFLP linkage map has been constructed and one of the yellow seed-coat colour loci has been mapped .
[ Sen. 6, subscore: 1.00 ]: Significant associations of RFLP markers with quantitative traits have also been established .
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Score: 3.00 |
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| Title: Comparative evaluation of within-cultivar variation of rice ( Oryza sativa L ) using microsatellite and RFLP markers .
| | Author: Olufowote JO Xu Y Chen X Park WD Beachell HM Dilday RH Goto M McCouch SR .
| | Journal: Genome Citation: V : 40 ( 3 ) P : 370-8 Year: 1997 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub9202415 Accession (PMID): 9202415 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: Seventy-one rice cultivars were evaluated for within-cultivar variation using a combination of phenotypic , RFLP , and microsatellite or simple sequence length polymorphism ( SSLP ) .
[ Sen. 4, subscore: 1.00 ]: Landrace cultivars were more heterogeneous and displayed a larger number of both RFLP and SSLP alleles than did modern cultivars .
[ Sen. 5, subscore: 1.00 ]: Microsatellite markers detected a greater number of alleles and were able to discriminate between even closely related individuals more efficiently than RFLPs .
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Score: 3.00 |
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| Title: Alien introgression in rice .
| | Author: Brar DS Khush GS .
| | Journal: Plant Mol . Biol . Citation: V : 35 ( 1-2 ) P : 35-47 Year: 1997 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub9291958 Accession (PMID): 9291958 | Matching Sentences:
[ Sen. 12, subscore: 1.00 ]: RFLP analysis revealed introgression from 11 of the 12 chromosomes of C genome species into rice .
[ Sen. 13, subscore: 1.00 ]: Introgression has also been obtained from other distant genomes ( EE , FF , GG ) into rice and in majority of the cases one or two RFLP markers were introgressed .
[ Sen. 14, subscore: 1.00 ]: Reciprocal replacement of RFLP alleles of wild species with the alleles of O sativa indicates alien gene transfer through crossing over .
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Score: 2.00 |
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| Title: Identification of mutable slender glume gene in rice ( Oryza sativa L ) .
| | Author: Teraishi M Okumoto Y Hirochika H Horibata A Yamagata H Tanisaka T | | Journal: Mol . Gen . Genet . Citation: V : 261 ( 3 ) P : 487-94 Year: 1999 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10323229 Accession (PMID): 10323229 | Matching Sentences:
[ Sen. 6, subscore: 2.00 ]: In a subsequent RFLP analysis , slg was found to be located between the two RFLP loci XNpb20 and XNpb33 , with recombination values of 3 . 0 and 3 . 2% , respectively .
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Score: 2.00 |
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| Title: RAPD mapping in a doubled haploid population of rice ( Oryza sativa L ) .
| | Author: Subudhi PK Huang N | | Journal: Hereditas Citation: V : 130 ( 1 ) P : 41-9 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10364828 Accession (PMID): 10364828 | Matching Sentences:
[ Sen. 4, subscore: 1.00 ]: The RAPD technique provided improved marker coverage on a previously developed RFLP map .
[ Sen. 6, subscore: 1.00 ]: The RAPD analysis as a realistic and practical alternative to RFLP and their usefulness in anchoring the identified BAC contigs directly to chromosomes is discussed .
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Score: 2.00 |
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| Title: Isolation and characterization of rice MADS box gene homologues and their RFLP mapping .
| | Author: Shinozuka Y Kojima S Shomura A Ichimura H Yano M Yamamoto K Sasaki T | | Journal: DNA Res .
Citation: V : 6 ( 2 ) P : 123-9 Year: 1999 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10382970 Accession (PMID): 10382970 | Matching Sentences:
[ Sen. 9, subscore: 1.00 ]: Restriction fragment length polymorphism ( RFLP ) linkage mapping revealed that the rice MADS box gene homologues reported here are not clustered but are located throughout the genome .
[ Sen. 10, subscore: 1.00 ]: The locus of E31864 on the RFLP map was closely linked to the long sterile lemma gene , g-1 .
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Score: 2.00 |
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| Title: [ Molecular mapping of the S-a locus for F1 pollen sterility in cultivated rice ( Oryza sativa L ) ] | | Author: Zhuang CX Zhang GQ Mei MT Lu YG .
| | Journal: Yi Chuan Xue Bao Citation: V : 26 ( 3 ) P : 213-8 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10589160 Accession (PMID): 10589160 | Matching Sentences:
[ Sen. 4, subscore: 1.00 ]: The polymorphism between T65 and TISL4 detected by RFLP and RAPD analysis was less than 1% .
[ Sen. 7, subscore: 1.00 ]: The genetic distances between S-a and RFLP markers CDO548 and RG146 are 6 . 4 cM and 7 . 2 cM respectively , and those between S-a and RAPD markers O11-1000 and Y13-500 are 6 . 8 cM and 11 . 2 cM respectively .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 2.00 |
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| Title: [ Favorable genes and favorable genic interactions enhancing F1 fertility in indica/japonica hybrids ] | | Author: Li RH Xu CG Li XH Wang XK .
| | Journal: Yi Chuan Xue Bao Citation: V : 26 ( 3 ) P : 228-38 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10589162 Accession (PMID): 10589162 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: Polymorphism of the cross parents and another set of diverse indica or japonica lines ( as a control ) was assayed by using 92 RFLP markers .
[ Sen. 3, subscore: 1.00 ]: 41 RFLP markers were detected highly associated with indica and japonica phenotypes , which can be used as diagnostic markers to differentiate indica and japonica .
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Score: 2.00 |
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| Title: Linkage group alignment of sorghum RFLP maps using a RIL mapping population .
| | Author: Subudhi PK Nguyen HT .
| | Journal: Genome Citation: V : 43 ( 2 ) P : 240-9 Year: 2000 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10791811 Accession (PMID): 10791811 | Matching Sentences:
[ Sen. 5, subscore: 1.00 ]: Five major restriction fragment length polymorphism ( RFLP ) maps independently developed in this species were used for alignment purpose .
[ Sen. 8, subscore: 1.00 ]: The successful alignment of these RFLP maps will now allow selection of a large number of markers for any region of the sorghum genome with many potential applications ranging from fine mapping and marker-assisted selection to map-based cloning for the improvement of sorghum and related species .
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Score: 2.00 |
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| Title: [ AFLP analysis of photoperiod-sensitive genic male sterile ( PGMS ) rice mutant lines ] | | Author: Li CY Zheng HG Weng ML Jia JH Mou TM Nguyen HT Wang B | | Journal: Sheng Wu Gong Cheng Xue Bao Citation: V : 16 ( 1 ) P : 91-5 Year: 2000 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10883285 Accession (PMID): 10883285 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: The relative efficiencies for polymorphism detection of RFLP , RAPD and AFLP were compared through the analysis between a pair of PGMS allelic mutant lines ( NK58S and NK58F ) .
[ Sen. 3, subscore: 1.00 ]: Results indicated that the efficiency for polymorphism detection in rice is in the order of AFLP > RAPD > RFLP , and also indicated that AFLP is a powerful DNA molecular marker technique for polymorphism detection , especially in the cases of extremely low polymorphism , such as isogeneic lines and allelic mutant lines .
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Score: 2.00 |
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| Title: [ RFLP analysis on wide compatibility genes in rice variety dular of ecotype aus ] | | Author: Yan CJ Liang GH Zhu LH Gu MH .
| | Journal: Yi Chuan Xue Bao Citation: V : 27 ( 5 ) P : 409-17 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub10979186 Accession (PMID): 10979186 | Matching Sentences:
[ Sen. 5, subscore: 1.00 ]: Based on 109 individuals of triple cross Nanjing 11 ( indica ) //++Dular/2533 ( japonica , a marker gene line , Rc and g ) , fertile and semisterile pools were set up by bulked segregant analysis , the RFLP analysis of the two pools led to the discovery of three chromosomal segments co-segregating with fertility .
[ Sen. 12, subscore: 1.00 ]: To introgress the three WCGs into a restorer line or an abortive line will overcome the hybrid sterility barrier of indica/japonica crosses , and the precise RFLP mapping will be useful for breeders to accumulate a few genes of interest into one cultivar by means of molecular marker assisted selection .
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Score: 2.00 |
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| Title: Isolation of a new retrotransposon-like DNA sequence and its use in analysis of diversity within the Oryza officinalis complex | | Author: Shcherban AB Vaughan DA Tomooka N | | Journal: Genetica Citation: V : 108 ( 2 ) P : 145-54 Year: Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11138942 Accession (PMID): 11138942 | Matching Sentences:
[ Sen. 3, subscore: 1.00 ]: RFLP analysis was used to study the genomic organisation of pOe . 49 among 30 accessions of the O officinalis complex using 10 restriction enzymes .
[ Sen. 4, subscore: 1.00 ]: Diversity analysis based on 120 polymorphic fragments obtained from the RFLP assay grouped the O officinalis complex accessions by genome , species and eco-geographic groups .
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Score: 2.00 |
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| Title: Characterization of euploid backcross progenies derived from interspecific hybrids between Oryza sativa and O eichingeri by restriction fragment length polymorphism ( RFLP ) analysis and genomic in situ hybridization ( GISH ) .
| | Author: Yan H Liu G Cheng Z Min S Zhu L | | Journal: Genome Citation: V : 44 ( 1 ) P : 86-95 Year: 2001 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11269361 Accession (PMID): 11269361 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Restriction fragment length polymorphism ( RFLP ) analysis and GISH ( genomic in situ hybridization ) were performed on euploid plants derived from crosses between Oryza sativa ( 2n = 24 , AA ) and two brown planthopper-resistant accessions of O eichingeri ( 2n = 24 , CC ) .
[ Sen. 2, subscore: 1.00 ]: After screening with 164 RFLP markers , 60 of the 67 euploid plants were identified as introgression lines , each carrying 1-6 small O eichingeri segments integrated on chromosomes 1 , 2 , 6 , or 10 .
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Score: 2.00 |
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| Title: An enhanced molecular marker based genetic map of perennial ryegrass ( Lolium perenne ) reveals comparative relationships with other Poaceae genomes .
| | Author: Jones ES Mahoney NL Hayward MD Armstead IP Jones JG Humphreys MO King IP Kishida T Yamada T Balfourier F Charmet G Forster JW .
| | Journal: Genome Citation: V : 45 ( 2 ) P : 282-95 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub11962626 Accession (PMID): 11962626 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: RFLP , AFLP , isoenzyme , and EST data from four collaborating laboratories within the International Lolium Genome Initiative were combined to produce an integrated genetic map containing 240 loci covering 811 cM on seven linkage groups .
[ Sen. 3, subscore: 1.00 ]: The map contained 124 codominant markers , of which 109 were heterologous anchor RFLP probes from wheat , barley , oat , and rice , allowing comparative relationships between perennial ryegrass and other Poaceae species to be inferred .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 2.00 |
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| Title: Candidate defense genes from rice , barley , and maize and their association with qualitative and quantitative resistance in rice .
| | Author: Ramalingam J Vera Cruz CM Kukreja K Chittoor JM Wu JL Lee SW Baraoidan M George ML Cohen MB Hulbert SH Leach JE Leung H | | Journal: Mol .
Plant Microbe Interact .
Citation: V : 16 ( 1 ) P : 14-24 Year: 2003 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12580278 Accession (PMID): 12580278 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: The 118 marker loci were either polymerase chain reaction-based RGA markers or restriction fragment length polymorphism ( RFLP ) markers that included RGAs or putative DR genes from rice , barley , and maize .
[ Sen. 3, subscore: 1.00 ]: The markers were placed on an existing RFLP map generated from a mapping population of 116 doubled haploid ( DH ) lines derived from a cross between an improved indica rice cultivar , IR64 , and a traditional japonica cultivar , Azucena .
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Score: 2.00 |
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| Title: A genetic and physical map of the region containing PLASTOCHRON1 , a heterochronic gene , in rice ( Oryza sativa L ) .
| | Author: Ahn O Miyoshi K Itoh JI Nagato Y Kurata N | | Journal: Citation: V : 105 ( 5 ) P : 654-659 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12582477 Accession (PMID): 12582477 | Matching Sentences:
[ Sen. 4, subscore: 1.00 ]: In a high-resolution genetic map , the pla1-1 locus was found to map between RFLP markers C961 and R1738A on chromosome 10 , within a 3 . 6-cM genetic distance .
[ Sen. 6, subscore: 1.00 ]: PCR-based RFLP markers from BAC-end clones were developed and mapped relative to the pla1 locus .
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Score: 2.00 |
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| Title: Mapping of the QTL ( quantitative trait locus ) conferring partial resistance to leaf blast in rice cultivar Chubu 32 .
| | Author: Zenbayashi K Ashizawa T Tani T Koizumi S | | Journal: Citation: V : 104 ( 4 ) P : 547-552 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12582657 Accession (PMID): 12582657 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: The rice cultivar Chubu 32 possesses a high level of partial resistance to leaf blast The number and chromosomal location of genes conferring this resistance were detected by restriction fragment length polymorphism ( RFLP ) linkage mapping and quantitative trait locus ( QTL ) analysis .
[ Sen. 3, subscore: 1.00 ]: A linkage map covering six chromosomes and consisting of 36 RFLP markers was constructed .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 2.00 |
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| Title: Genetic differentiation of wild relatives of rice as assessed by RFLP analysis .
| | Author: Lu BR Zheng KL Qian HR Zhuang JY .
| | Journal: Theor . Appl . Genet . Citation: V : 106 ( 1 ) P : 101-6 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12582876 Accession (PMID): 12582876 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: To study genetic diversity and relationships of wild relatives of rice , 58 accessions of Oryza rufipogon , Oryza nivara , Oryza sativa f . spontanea and the cultivated Oryza sativa , representing a wide range of their distribution , were analyzed using the restriction fragment length polymorphism ( RFLP ) technique .
[ Sen. 2, subscore: 1.00 ]: All 30-used RFLP probes detected polymorphisms among the Oryza accessions , with an average of 3 . 8 polymorphic fragments per probe .
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