457 matches found in 226 documents. Search time: 0.012 seconds. |
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Score: 14.00 | Title: Detection of QTLs with additive effects and additive-by-environment interaction effects on panicle number in rice ( Oryza sativa L ) with single-segment substitution lines .
| Author: Liu G Zhang Z Zhu H Zhao F Ding X Zeng R Li W Zhang G | Journal: Theor Appl Genet Citation: V : 116 P : 923-31 Year: 2008 Type: MEDLINE | Literature: oryza Field: abstract Doc ID: pub18274724 Accession (PMID): 18274724 | Matching Sentences: [ Sen. 8, subscore: 11.00 ]: Two QTLs ( Pn-1b and Pn-6d ) expressed stably across environments due to the association with only a , nine QTLs ( Pn-1a , Pn-3c , Pn-3d , Pn-4 , Pn-6a , Pn-6b , Pn-8 , Pn-9 and Pn-12 ) with only ae were unstable , and the remaining seven of QTLs were identified with both a and ae , which also were unstable across environments . [ Sen. 1, subscore: 1.00 ]: A novel population consisting of 35 single-segment substitution lines ( SSSLs ) originating from crosses between the recipient parent , Hua-jing-xian 74 ( HJX74 ) , and 17 donor parents was evaluated in six cropping season environments to reveal the genetic basis of genetic main effect ( G ) and genotype-by-environment interaction effect ( GE ) for panicle number ( PN ) in rice . [ Sen. 4, subscore: 1.00 ]: At least 18 QTLs for PN in rice were detected and identified on 9 of 12 rice chromosomes . [ Sen. 11, subscore: 1.00 ]: Information provided in this paper could be used in the application of marker-assisted selection to manipulate PN in rice .
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Score: 11.00 | Title: Purification and characterization of beta-N-acetylhexosaminidase from rice seeds .
| Author: Jin YL Jo YY Kim KY Shim JH Kim YW Park RD .
| Journal: J Biochem . Mol . Biol . Citation: V : 35 ( 3 ) P : 313-9 Year: 2002 Type: ARTICLE | Literature: oryza Field: abstract Doc ID: pub12297015 Accession (PMID): 12297015 | Matching Sentences: [ Sen. 6, subscore: 2.00 ]: The enzyme catalyzed the hydrolysis of both p-nitrophenyl-N-acetyl-beta-D-glucosaminide ( pNP-GlcNAc ) and p-nitrophenyl-N-acetyl-beta-D-galactosaminide ( pNPGalNAc ) as substrates , which are typical properties of beta-HexNAcase . [ Sen. 7, subscore: 2.00 ]: The ratio of the pNP-GlcNAcase activity to the pNP-GalNAcase activity was 4 . 0 . [ Sen. 8, subscore: 2.00 ]: However , it could not hydrolyze chitin , chitosan , pNP-beta-glucopyranoside , or pNP-beta-galactopyranoside . [ Sen. 10, subscore: 2.00 ]: The comparison of kinetic values for pNPGlcNAc and pNP-GalNAc revealed that the two enzyme activities are associated with a single binding site . [ Sen. 9, subscore: 1.00 ]: The enzyme showed K ( M ) , V ( max ) and K ( cat ) for pNP-GlcNAc of 1 . 65mM , 79 . 49mM min ( 1 ) , and 4 . 79 x 10 ( 6 ) min ( 1 ) , respectively . [ Sen. 11, subscore: 1.00 ]: The purified enzyme exhibited optimum pH and temperature for pNPGlcNAc of 5 . 0 and 50 degrees C , respectively . [ Sen. 12, subscore: 1.00 ]: The enzyme activity for pNP-GlcNAc was stable at pH 5 . 0-5 . 5 and 20-40 degrees C The enzyme activity was completely inhibited at a concentration of 0 . 1 mM HgCl ( 2 ) and AgNO ( 3 ) , suggesting that the intact thiol group is essential for activity .
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Score: 9.00 | Title: A circadian rhythm set by dusk determines the expression of FT homologs and the short-day photoperiodic flowering response in Pharbitis .
| Author: Hayama R Agashe B Luley E King R Coupland G | Journal: Plant Cell Citation: V : 19 P : 2988-3000 Year: 2007 Type: In-Process | Literature: oryza Field: abstract Doc ID: pub17965272 Accession (PMID): 17965272 | Matching Sentences: [ Sen. 8, subscore: 3.00 ]: In these assays , Pn FT mRNA abundance was not related to Pn CO expression , suggesting that Pn FT may be regulated by a different transcription factor in Pharbitis . [ Sen. 4, subscore: 2.00 ]: We studied Pharbitis ( Ipomoea nil ; formerly , Pharbitis nil ) , a widely used SD model species and a member of the Convolvulaceae , and showed using transgenic plants together with detailed expression analysis that two putative orthologs of FT ( Pn FT1 and Pn FT2 ) promote flowering specifically under SDs . [ Sen. 7, subscore: 2.00 ]: Furthermore , Pharbitis accessions that differ in their critical night-length responses express Pn FT at different times after dusk , demonstrating that natural genetic variation influencing the clock regulating Pn FT expression alters the flowering response . [ Sen. 6, subscore: 1.00 ]: We demonstrate that in Pharbitis a circadian rhythm set by the light-to-dark transition at dusk regulates Pn FT expression , which rises only when the night is longer than 11 h . [ Sen. 9, subscore: 1.00 ]: We conclude that SD response in Pharbitis is controlled by a dedicated light sensitive clock , set by dusk , that activates Pn FT transcription in darkness , a different mechanism for measuring daylength than described for Arabidopsis and rice .
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Score: 8.00 | Title: [ Analysis of additive and AE interaction effects of QTLs controlling plant height , heading date and panicle number in rice ( Oryza sativa L ) ] | Author: Yuan AP Cao LY Zhuang JY Li RZ Zheng KL Zhu J Cheng SH .
| Journal: Yi Chuan Xue Bao Citation: V : 30 ( 10 ) P : 899-906 Year: 2003 Type: ARTICLE | Literature: oryza Field: abstract Doc ID: pub14669505 Accession (PMID): 14669505 | Matching Sentences: [ Sen. 6, subscore: 2.00 ]: QTLMapper 1 . 01 was applied to detect QTLs and QTL x environment ( QE ) interaction for HD ( heading data ) , PH ( plant height ) and PN ( panicle number ) , and conditional mapping for PH and PN was performed as well . [ Sen. 1, subscore: 1.00 ]: Plant height ( PH ) , heading date ( HD ) and productive panicle number ( PN ) are important agronomic trait in rice . [ Sen. 8, subscore: 1.00 ]: Ten QTLs with additive x additive epistatic effects for PH , HD and PN were detected , among which none showed significant epistatisis x environment interaction . [ Sen. 9, subscore: 1.00 ]: These QTLs explained 12 . 12% , 1 . 38% and 5 . 00% of the total phenotypic variance for PH , HD and PN , respectively , and contributions were generally lower due to the strong epistatic effects . [ Sen. 10, subscore: 1.00 ]: In conditional QTL analysis , the numbers of QTLs showing significant additive and epistatic effects were 7 and 6 for PH , and 3 and 3 for PN , respectively . [ Sen. 12, subscore: 1.00 ]: Each of the 3 QTLs having significant additive effects for PN did not display significant QE interaction . [ Sen. 14, subscore: 1.00 ]: In addition , conditional QTL analysis indicated that the expression of QTLs for PH and PN may vary depending on the QTLs for HD .
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Score: 8.00 | Title: Nucleic acid binding activity of pns6 encoded by genome segment 6 of rice ragged stunt oryzavirus .
| Author: Shao CG L HJ Wu JH Gong ZX .
| Journal: Acta Biochim . Biophys . Sin . ( Shanghai ) Citation: V : 36 ( 7 ) P : 457-66 Year: 2004 Type: ARTICLE | Literature: oryza Field: abstract Doc ID: pub15248020 Accession (PMID): 15248020 | Matching Sentences: [ Sen. 6, subscore: 2.00 ]: By using five truncated derivatives of Pns6 , it was found that the basic region from amino acid 201 to 273 of Pns6 was the unique nucleic acid binding domain . [ Sen. 2, subscore: 1.00 ]: Pns6 , the 71 kD product of S6 expressed in E coli , was demonstrated to be a viral non-structural protein of RRSV by Western blotting . [ Sen. 3, subscore: 1.00 ]: The gel mobility shift assays showed that Pns6 had nucleic acid binding activity . [ Sen. 4, subscore: 1.00 ]: Pns6 could interact with single and double-stranded forms of DNA and RNA , showing a preference for single-stranded nucleic acid and a slight preference for RRSV ssRNA over the rice ssRNA , as demonstrated by both competition and displacement assays . [ Sen. 5, subscore: 1.00 ]: The binding of Pns6 to nucleic acids is strong and sequence non-specific . [ Sen. 7, subscore: 1.00 ]: Subcellular fractionation of leaf it issues of RRSV-infected rice plants and subsequent Western blotting had shown that Pns6 accumulated predominately in the cytoplasmic membrane fraction . [ Sen. 8, subscore: 1.00 ]: The possible role of RRSV Pns6 in virus replication and assembly is discussed .
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Score: 8.00 | Title: Treatment of p-nitrophenol in an adsorbent-supplemented sequencing batch reactor .
| Author: Loo YM Lim PE Seng CE | Journal: Environ Technol Citation: V : 31 P : 479-87 Year: 2010 Type: MEDLINE | Literature: oryza Field: abstract Doc ID: pub20480823 Accession (PMID): 20480823 | Matching Sentences: [ Sen. 6, subscore: 3.00 ]: When the dosage of 1 . 0 g PAC/cycle was applied , COD removal of 95% and almost complete removal of PNP were achieved at the influent PNP concentration of 300 mg/L The kinetic study showed that the rates of COD and PNP removal can be described by the first-order kinetics . [ Sen. 4, subscore: 2.00 ]: The results showed that , without the addition of adsorbent , increasing the influent PNP concentration to 200 mg/L resulted in the deterioration of chemical oxygen demand ( COD ) removal efficiency and PNP removal efficiency in the SBRs . [ Sen. 1, subscore: 1.00 ]: The objective of this research was to evaluate the treatment ofp-nitrophenol ( PNP ) as a sole organic carbon source using a sequencing batch reactor ( SBR ) with the addition of adsorbent . [ Sen. 7, subscore: 1.00 ]: The enhancement of performance in the PAC-supplemented SBR was postulated to be due to the initial adsorption of PNP by the freshly added and the bioregenerated PAC , thus reducing the inhibition on the microorganisms . [ Sen. 8, subscore: 1.00 ]: The PRH was found to be ineffective because of its relatively low adsorption capacity for PNP , compared with that of PAC .
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Score: 8.00 | Title: Rice ragged stunt virus segment S6-encoded nonstructural protein Pns6 complements cell-to-cell movement of Tobacco mosaic virus-based chimeric virus .
| Author: Wu Z Wu J Adkins S Xie L Li W | Journal: Virus Res Citation: V : 152 P : 176-9 Year: 2010 Type: MEDLINE | Literature: oryza Field: abstract Doc ID: pub20541571 Accession (PMID): 20541571 | Matching Sentences: [ Sen. 2, subscore: 3.00 ]: In this study , the role of three nonstructural proteins Pns6 , Pns7 and Pns10 in cell-to-cell movement were determined with a movement-deficient Tobacco mosaic virus ( TMV ) vector . [ Sen. 3, subscore: 2.00 ]: The results showed that only the Pns6 could complement the cell-to-cell movement of the movement-deficient TMV in Nicotiana tabacum Xanthi nc and N benthamiana plants , and both N and C-terminal 50 amino acids of Pns6 were essential for the cell-to-cell movement . [ Sen. 5, subscore: 2.00 ]: Taken together with previous finding that the Pns6 has nucleic acid-binding activity ( Shao et al , 2004 ) , the possible role of Pns6 in cell-to-cell movement of RRSV were discussed . [ Sen. 4, subscore: 1.00 ]: Transient expression in epidermal cells from N benthamiana showed that the Pns6-eGFP fusion protein was present predominantly along the cell wall as well as a few punctate sites perhaps indicating plasmodesmata .
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Score: 8.00 | Title: Viroplasm matrix protein Pns9 from rice gall dwarf virus forms an octameric cylindrical structure .
| Author: Akita F Miyazaki N Hibino H Shimizu T Higashiura A Uehara-Ichiki T Sasaya T Tsukihara T Nakagawa A Iwasaki K Omura T | Journal: J Gen Virol Citation: V : 92 P : 2214-21 Year: 2011 Type: MEDLINE | Literature: oryza Field: abstract Doc ID: pub21613445 Accession (PMID): 21613445 | Matching Sentences: [ Sen. 2, subscore: 3.00 ]: Immunofluorescence and immunoelectron microscopy of RGDV-infected vector cells in monolayers , using antibodies against Pns9 of RGDV and expression of Pns9 in Spodoptera frugiperda cells , demonstrated that Pns9 is the minimal viral factor necessary for formation of viroplasm inclusion during infection by RGDV . [ Sen. 1, subscore: 1.00 ]: The non-structural Pns9 protein of rice gall dwarf virus ( RGDV ) accumulates in viroplasm inclusions , which are structures that appear to play an important role in viral morphogenesis and are commonly found in host cells infected by viruses in the family Reoviridae . [ Sen. 3, subscore: 1.00 ]: When Pns9 in solution was observed under a conventional electron microscope , it appeared as ring-like aggregates of approximately 100 A in diameter . [ Sen. 4, subscore: 1.00 ]: Cryo-electron microscopic analysis of these aggregates revealed cylinders of octameric Pns9 , whose dimensions were similar to those observed under the conventional electron microscope . [ Sen. 5, subscore: 1.00 ]: Octamerization of Pns9 in solution was confirmed by the results of size-exclusion chromatography . [ Sen. 6, subscore: 1.00 ]: Among proteins of viruses that belong to the family Reoviridae whose three-dimensional structures are available , a matrix protein of the viroplasm of rotavirus , NSP2 , forms similar octamers , an observation that suggests similar roles for Pns9 and NSP2 in morphogenesis in animal-infecting and in plant-infecting reoviruses .
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Score: 7.00 | Title: Molecular marker dissection of rice ( Oryza sativa L ) plant architecture under temperate and tropical climates .
| Author: Kobayashi S Fukuta Y Sato T Osaki M Khush GS .
| Journal: Theor . Appl . Genet . Citation: V : 107 ( 8 ) P : 1350-6 Year: 2003 Type: ARTICLE | Literature: oryza Field: abstract Doc ID: pub12920520 Accession (PMID): 12920520 | Matching Sentences: [ Sen. 2, subscore: 2.00 ]: The purpose of this study was to identify and characterize genomic regions influencing the rice plant architecture by quantitative trait locus ( QTL ) analysis for the component traits : culm length ( CL ) , panicle length ( PnL ) , panicle number ( PnN ) and tiller number ( TN ) . [ Sen. 6, subscore: 2.00 ]: 6 and 11 ) affected shoot elongation ( CL and PnL ) and tillering ( PnN and TN ) in opposite directions more significantly in Los Baos than in Joetsu . [ Sen. 12, subscore: 2.00 ]: 1 , 2 , 4 , 5 , 6 , 8 and 9 ) controlled panicle development ( PnN or PnL ) , and in Group V , three regions ( chrs . [ Sen. 13, subscore: 1.00 ]: 1 , 2 and 3 ) regulated tillering ( PnN or TN ) .
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Score: 7.00 | Title: Silencing by RNAi of the gene for Pns12 , a viroplasm matrix protein of Rice dwarf virus , results in strong resistance of transgenic rice plants to the virus .
| Author: Shimizu T Yoshii M Wei T Hirochika H Omura T | Journal: Plant Biotechnol J Citation: V : 7 P : 24-32 Year: 2009 Type: MEDLINE | Literature: oryza Field: abstract Doc ID: pub18761654 Accession (PMID): 18761654 | Matching Sentences: [ Sen. 3, subscore: 2.00 ]: We introduced Pns12 and Pns4-specific RNA interference ( RNAi ) constructs into rice plants . [ Sen. 1, subscore: 1.00 ]: The non-structural protein Pns12 of Rice dwarf virus is one of the early proteins expressed in cultured insect cells , and it is one of 12 proteins that initiate the formation of the viroplasm , the putative site of viral replication . [ Sen. 2, subscore: 1.00 ]: Pns4 is also a non-structural protein , visible as minitubules after nucleation of the viroplasm . [ Sen. 5, subscore: 1.00 ]: The progeny of rice plants with Pns12-specific RNAi constructs , after self-fertilization , were strongly resistant to viral infection . [ Sen. 6, subscore: 1.00 ]: By contrast , resistance was less apparent in the case of rice plants with Pns4-specific RNAi constructs , and delayed symptoms appeared in some plants of each line . [ Sen. 7, subscore: 1.00 ]: Our results suggest that interference with the expression of a protein that is critical for viral replication , such as the viroplasm matrix protein Pns12 , might be a practical and effective way to control viral infection in crop plants .
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