About Textpresso Categories/Ontology Copyright Downloads Feedback Home Query Language Search User Guide
Enter keyword(s) and/or category/ies. Selecting categories for a query makes a search more specific. For example, you can retrieve sentences that contain the word HSN and a Oryza sativa gene name by typing the keyword 'SPW1' and choosing the category 'gene (Oryza sativa)'. A category hit occurs when a particular word or phrase in the sentence is defined as a member of a particular category. Categories will be concatenated by a Boolean 'and' operation to other categories and keyword(s) if present. To search for terms in categories, click on the Categories/Ontology link above.
Keywords
Separate multiple, required keywords by white spaces (Boolean 'and').
Separate multiple, alternative keywords by a comma with no white spaces (Boolean 'or').
Enter phrases in double quotes, and put a '-' sign in front of words which are to be excluded.
Keyword Specification
AND/OR
Categories
Fields
Search Scope
Search Mode
Sort by
 
Narrow your search results with filter:
Put a '+' sign in front of words which have to be included, a '-' sign in front of words which have to be excluded. Enter the field of the word, viz author, title, year, journal, abstract, type or sentence in square brackets. Enter phrases in double quotes.
For example, to find all the papers in the search result that have Jack as author, but not John, enter +Jack-John[author]. To exclude all papers that have the phrase double mutant in title, enter -"double mutant"[title]. You can combine several filters and enter something like +Jack-John[author] -"double mutant"[title] +1994[year] -review[type].
Click on Filter! button to activate the filter.

Goto:
of 3
Display options:
author: on | off accession: on | off type: on | off abstract: on | off title: on | off
citation: on | off journal: on | off year: on | off supplementals: on | off textlinks: on | off
searchterm-highlighting: on | off matching sentences: none 1 5 10 entries/page: 5 10 20 50
29 matches found in 12 documents. Search time: 0.059 seconds.
Global links/files: all results in endnote all results in print version
Score: 14.00
Title: DNA polymorphism in the blast disease resistance gene Pita of the wild rice Oryza rufipogon and its related species .
Author: Yoshida K Miyashita NT
Journal: Genes Genet Syst Citation: V : 84 P : 121-36 Year: 2009 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub19556706 Accession (PMID): 19556706
Matching Sentences:
[ Sen. 1, subscore: 2.00 ]: Intra-and interspecific DNA variations in the blast resistance gene Pita in wild rice ( Oryza rufipogon ) , cultivated rice ( O sativa ) , and two other related wild rice species ( O meridionalis and O officinalis ) were analyzed to elucidate the nucleotide polymorphism maintenance mechanisms and evolution of Pita in these species .
[ Sen. 5, subscore: 2.00 ]: The resistance Pita allele had lower levels of variation than the susceptibility pita allele .
[ Sen. 7, subscore: 2.00 ]: These results suggested that the resistance Pita originated from the susceptibility pita .
[ Sen. 2, subscore: 1.00 ]: Nucleotide diversity at silent sites of O rufipogon Pita was 0 . 0101 , an intermediate value relative to other O rufipogon nuclear genes .
[ Sen. 3, subscore: 1.00 ]: A dimorphic pattern of nucleotide polymorphism was detected in the O rufipogon Pita region .
[ Sen. 4, subscore: 1.00 ]: Inoculation of the blast fungus Magnaporthe oryzae verified that the O rufipogon Pita gene resides in a dimorphic sequence type .
[ Sen. 6, subscore: 1.00 ]: A hypothesis of evolutionary relationships indicated that the amino acid mutation in the O rufipogon Pita protein responsible for the difference between resistance and susceptibility occurred relatively recently .
[ Sen. 8, subscore: 1.00 ]: Nucleotide diversity at replacement sites of the leucine-rich domain ( LRD ) of both the resistance and susceptibility O rufipogon pita was low .
[ Sen. 9, subscore: 1.00 ]: In tests of neutrality , significantly negative values were detected for the LRD of O rufipogon susceptibility pita .
[ Sen. 10, subscore: 1.00 ]: The low nucleotide diversity at replacement sites of the LRD of the susceptibility pita could be explained by purifying selection .
[ Sen. 11, subscore: 1.00 ]: Comparison of Pita between O rufipogon and O officinalis revealed an excess of nonconservative amino acid substitutions in the LRD , which could be related to the host-pathogen interaction .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 4.00
Title: Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes .
Author: Hayashi K Yoshida H Ashikawa I
Journal: Citation: V : ( ) P : Year: 2006 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub16673143 Accession (PMID): 16673143
Matching Sentences:
[ Sen. 3, subscore: 2.00 ]: We developed sets of allele-specific PCR and InDel markers for nine rice blast resistance genes-Piz , Piz-t , Pit , Pik , Pik-m , Pik-p , Pita , Pita-2 , and Pib-which are commonly used in Japanese blast resistance rice breeding programs .
[ Sen. 5, subscore: 2.00 ]: The developed cosegregating markers uniquely discriminated among each of the lines with the individual resistance genes ( except for Pita and Pita-2 ) .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 4.00
Title: Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes .
Author: Hayashi K Yoshida H Ashikawa I
Journal: Theor . Appl . Genet . Citation: V : 113 ( 2 ) P : 251-60 Year: 2006 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub16791691 Accession (PMID): 16791691
Matching Sentences:
[ Sen. 3, subscore: 2.00 ]: We developed sets of allele-specific PCR and InDel markers for nine rice blast resistance genes -- Piz , Piz-t , Pit , Pik , Pik-m , Pik-p , Pita , Pita-2 , and Pib -- which are commonly used in Japanese blast resistance rice breeding programs .
[ Sen. 5, subscore: 2.00 ]: The developed cosegregating markers uniquely discriminated among each of the lines with the individual resistance genes ( except for Pita and Pita-2 ) .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 4.00
Title: Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species .
Author: Chuma I Isobe C Hotta Y Ibaragi K Futamata N Kusaba M Yoshida K Terauchi R Fujita Y Nakayashiki H Valent B Tosa Y
Journal: PLoS Pathog Citation: V : 7 P : e1002147 Year: 2011 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub21829350 Accession (PMID): 21829350
Matching Sentences:
[ Sen. 3, subscore: 1.00 ]: To address how the rice blast fungus adapts itself to new resistance genes so quickly , we examined chromosomal locations of AVR-Pita , a subtelomeric gene family corresponding to the Pita resistance gene , in various isolates of M oryzae ( including wheat and millet pathogens ) and its related species .
[ Sen. 5, subscore: 1.00 ]: When expressed in M oryzae , most of the AVR-Pita homologs could elicit Pita-mediated resistance , even those from non-rice isolates .
[ Sen. 8, subscore: 1.00 ]: These results suggest that the diversification in genome location of AVR-Pita in the rice isolates is a consequence of recognition by Pita in rice .
[ Sen. 10, subscore: 1.00 ]: This model implies that the high mobility of AVR-Pita is a key mechanism accounting for the rapid adaptation toward Pita .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 3.00
Title: One of two major paralogs of AVR-Pita1 is functional in Japanese rice blast isolates .
Author: Takahashi M Ashizawa T Hirayae K Moriwaki J Sone T Sonoda R Noguchi MT Nagashima S Ishikawa K Arai M
Journal: Phytopathology Citation: V : 100 P : 612-8 Year: 2010 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub20465417 Accession (PMID): 20465417
Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: We analyzed the avirulence gene AVR-Pita1 in Japanese rice blast isolates to determine how they gain virulence toward rice cultivars containing the Pita resistance gene .
[ Sen. 6, subscore: 1.00 ]: Isolates that show virulence toward rice cultivars containing the Pita gene are presumed to have evolved virulence from avirulent origins via loss of AVR-Pita1 ( JA ) , except for one case in which virulence resulted from a base substitution .
[ Sen. 7, subscore: 1.00 ]: In this study , we discuss the properties and specificities of Japanese rice blasts that relate to virulence against Pita-containing rice .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Goto:

© Textpresso Fri Mar 29 04:06:21 2024 .