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Title: A candidate autonomous version of the wheat MITE Hikkoshi is present in the rice genome .
Author: Saito M Yonemaru J Ishikawa G Nakamura T
Journal: Mol . Genet . Genomics Citation: V : 273 ( 5 ) P : 404-14 Year: 2005 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub15883824 Accession (PMID): 15883824
Abstract: A miniature inverted-repeat transposable element ( MITE ) , designated as Hikkoshi , was previously identified in the null Wx-A1 allele of Turkish bread wheat lines . This MITE is 165 bp in size and has 12-bp terminal inverted repeats ( TIRs ) flanked by 8-bp target site duplications ( TSDs ) . Southern and PCR analyses demonstrated the presence of multiple copies of Hikkoshi in the wheat genome . Database searches indicated that Hikkoshi MITEs are also present in barley , rice and maize . A 3 . 4-kb element that has Hikkoshi-like TIRs flanked by 8-bp TSDs has now been identified in the rice genome . This element shows high similarity to the 5 subterminal region of the wheat Hikkoshi MITE and contains a transposase ( TPase ) coding region . The TPase has two conserved domains , ZnF_TTF and hATC , and its amino acid sequence shows a high degree of homology to TPases encoded by Tip100 transposable elements belonging to the hAT superfamily . We designated the 3 . 4-kb element as OsHikkoshi . Several wheat clones deposited in EST databases showed sequence similarity to the TPase ORF of OsHikkoshi . The sequence information from the TPase of OsHikkoshi will thus be useful in isolating the autonomous element of the Hikkoshi system from wheat .
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[ Sen. 7, subscore: 1.00 ]: The TPase has two conserved domains , ZnF_TTF and hATC , and its amino acid sequence shows a high degree of homology to TPases encoded by Tip100 transposable elements belonging to the hAT superfamily .
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