About Textpresso Categories/Ontology Copyright Downloads Feedback Home Query Language Search User Guide
Enter keyword(s) and/or category/ies. Selecting categories for a query makes a search more specific. For example, you can retrieve sentences that contain the word HSN and a Oryza sativa gene name by typing the keyword 'SPW1' and choosing the category 'gene (Oryza sativa)'. A category hit occurs when a particular word or phrase in the sentence is defined as a member of a particular category. Categories will be concatenated by a Boolean 'and' operation to other categories and keyword(s) if present. To search for terms in categories, click on the Categories/Ontology link above.
Keywords
Separate multiple, required keywords by white spaces (Boolean 'and').
Separate multiple, alternative keywords by a comma with no white spaces (Boolean 'or').
Enter phrases in double quotes, and put a '-' sign in front of words which are to be excluded.
Keyword Specification
AND/OR
Categories
Fields
Search Scope
Search Mode
Sort by
 
Narrow your search results with filter:
Put a '+' sign in front of words which have to be included, a '-' sign in front of words which have to be excluded. Enter the field of the word, viz author, title, year, journal, abstract, type or sentence in square brackets. Enter phrases in double quotes.
For example, to find all the papers in the search result that have Jack as author, but not John, enter +Jack-John[author]. To exclude all papers that have the phrase double mutant in title, enter -"double mutant"[title]. You can combine several filters and enter something like +Jack-John[author] -"double mutant"[title] +1994[year] -review[type].
Click on Filter! button to activate the filter.

Goto:
of 1
Display options:
author: on | off accession: on | off type: on | off abstract: on | off title: on | off
citation: on | off journal: on | off year: on | off supplementals: on | off textlinks: on | off
searchterm-highlighting: on | off matching sentences: none 1 5 10 entries/page: 5 10 20 50
8 matches found in 3 documents. Search time: 0.029 seconds.
Global links/files: all results in endnote all results in print version
Score: 4.00
Title: The combination of a novel stimulatory element in the first exon of the maize Shrunken-1 gene with the following intron 1 enhances reporter gene expression up to 1000-fold .
Author: Maas C Laufs J Grant S Korfhage C Werr W
Journal: Plant Mol . Biol . Citation: V : 16 ( 2 ) P : 199-207 Year: 1991 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub1893097 Accession (PMID): 1893097
Abstract: Both exon 1 and intron 1 of the maize Shrunken-1 ( Sh1 ) gene individually stimulate expression of reporter genes in transient gene expression experiments if present within the transcription unit . The Sh1 exon 1 mediates a 10-fold increase in activity when inserted at the 5 end of the bacterial chloramphenicol transacetylase ( CAT ) marker gene in both monocot and dicot protoplasts . The Sh1 intron 1 enhances chimeric gene expression in rice and maize protoplasts approximately 100-fold but inhibits CAT expression in tobacco protoplasts . In combination , the stimulatory effects of Sh1 exon 1 and intron 1 are multiplicative in monocot protoplasts resulting in a final enhancement of up to 1000-fold compared to the unmodified CAT or luciferase marker genes .
Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Both exon 1 and intron 1 of the maize Shrunken-1 ( Sh1 ) gene individually stimulate expression of reporter genes in transient gene expression experiments if present within the transcription unit .
[ Sen. 2, subscore: 1.00 ]: The Sh1 exon 1 mediates a 10-fold increase in activity when inserted at the 5 end of the bacterial chloramphenicol transacetylase ( CAT ) marker gene in both monocot and dicot protoplasts .
[ Sen. 3, subscore: 1.00 ]: The Sh1 intron 1 enhances chimeric gene expression in rice and maize protoplasts approximately 100-fold but inhibits CAT expression in tobacco protoplasts .
[ Sen. 4, subscore: 1.00 ]: In combination , the stimulatory effects of Sh1 exon 1 and intron 1 are multiplicative in monocot protoplasts resulting in a final enhancement of up to 1000-fold compared to the unmodified CAT or luciferase marker genes .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 3.00
Title: Parallel domestication of the Shattering1 genes in cereals .
Author: Lin Z Li X Shannon LM Yeh CT Wang ML Bai G Peng Z Li J Trick HN Clemente TE Doebley J Schnable PS Tuinstra MR Tesso TT White F Yu J
Journal: Nat Genet Citation: V : 44 P : 720-4 Year: 2012 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub22581231 Accession (PMID): 22581231
Abstract: A key step during crop domestication is the loss of seed shattering . Here , we show that seed shattering in sorghum is controlled by a single gene , Shattering1 ( Sh1 ) , which encodes a YABBY transcription factor . Domesticated sorghums harbor three different mutations at the Sh1 locus . Variants at regulatory sites in the promoter and intronic regions lead to a low level of expression , a 2 . 2-kb deletion causes a truncated transcript that lacks exons 2 and 3 , and a GT-to-GG splice-site variant in the intron 4 results in removal of the exon 4 . The distributions of these non-shattering haplotypes among sorghum landraces suggest three independent origins . The function of the rice ortholog ( OsSh1 ) was subsequently validated with a shattering-resistant mutant , and two maize orthologs ( ZmSh1-1 and ZmSh1-5 . 1+ZmSh1-5 . 2 ) were verified with a large mapping population . Our results indicate that Sh1 genes for seed shattering were under parallel selection during sorghum , rice and maize domestication .
Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: Here , we show that seed shattering in sorghum is controlled by a single gene , Shattering1 ( Sh1 ) , which encodes a YABBY transcription factor .
[ Sen. 3, subscore: 1.00 ]: Domesticated sorghums harbor three different mutations at the Sh1 locus .
[ Sen. 7, subscore: 1.00 ]: Our results indicate that Sh1 genes for seed shattering were under parallel selection during sorghum , rice and maize domestication .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 1.00
Title: One genes shattering effects .
Author: Olsen KM
Journal: Nat Genet Citation: V : 44 P : 616-7 Year: 2012 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub22641204 Accession (PMID): 22641204
Abstract: A new study shows that three independent mutations in the Sh1 gene , which encodes a YABBY transcription factor , gave rise to the non-shattering seed phenotype in domesticated sorghum . This same gene may have also had a role in the domestication of other cereals , including maize and rice .
Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: A new study shows that three independent mutations in the Sh1 gene , which encodes a YABBY transcription factor , gave rise to the non-shattering seed phenotype in domesticated sorghum .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Goto:

© Textpresso Sat May 4 12:35:11 2024 .