About Textpresso Categories/Ontology Copyright Downloads Feedback Home Query Language Search User Guide
Enter keyword(s) and/or category/ies. Selecting categories for a query makes a search more specific. For example, you can retrieve sentences that contain the word HSN and a Oryza sativa gene name by typing the keyword 'SPW1' and choosing the category 'gene (Oryza sativa)'. A category hit occurs when a particular word or phrase in the sentence is defined as a member of a particular category. Categories will be concatenated by a Boolean 'and' operation to other categories and keyword(s) if present. To search for terms in categories, click on the Categories/Ontology link above.
Keywords
Separate multiple, required keywords by white spaces (Boolean 'and').
Separate multiple, alternative keywords by a comma with no white spaces (Boolean 'or').
Enter phrases in double quotes, and put a '-' sign in front of words which are to be excluded.
Keyword Specification
AND/OR
Categories
Fields
Search Scope
Search Mode
Sort by
 
Narrow your search results with filter:
Put a '+' sign in front of words which have to be included, a '-' sign in front of words which have to be excluded. Enter the field of the word, viz author, title, year, journal, abstract, type or sentence in square brackets. Enter phrases in double quotes.
For example, to find all the papers in the search result that have Jack as author, but not John, enter +Jack-John[author]. To exclude all papers that have the phrase double mutant in title, enter -"double mutant"[title]. You can combine several filters and enter something like +Jack-John[author] -"double mutant"[title] +1994[year] -review[type].
Click on Filter! button to activate the filter.

Goto:
of 3
Display options:
author: on | off accession: on | off type: on | off abstract: on | off title: on | off
citation: on | off journal: on | off year: on | off supplementals: on | off textlinks: on | off
searchterm-highlighting: on | off matching sentences: none 1 5 10 entries/page: 5 10 20 50
28 matches found in 12 documents. Search time: 0.102 seconds.
Global links/files: all results in endnote all results in print version
Score: 10.00
Title: Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice .
Author: Morinaka Y Sakamoto T Inukai Y Agetsuma M Kitano H Ashikari M Matsuoka M
Journal: Plant Physiol . Citation: V : 141 ( 3 ) P : 924-31 Year: 2006 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub16714407 Accession (PMID): 16714407
Abstract: The rice ( Oryza sativa ) dwarf mutant d61 phenotype is caused by loss of function of a rice BRASSINOSTEROID INSENSITIVE1 ortholog , OsBRI1 . We have identified nine d61 alleles , the weakest of which , d61-7 , confers agronomically important traits such as semidwarf stature and erect leaves . Because erect-leaf habit is considered to increase light capture for photosynthesis , we compared the biomass and grain production of wild-type and d61-7 rice . The biomass of wild type was 38% higher than that of d61-7 at harvest under conventional planting density because of the dwarfism of d61-7 . However , the biomass of d61-7 was 35% higher than that of wild type at high planting density . The grain yield of wild type reached a maximum at middensity , but the yield of d61-7 continued to increase with planting density . These results indicate that d61-7 produces biomass more effectively than wild type , and consequently more effectively assimilates the biomass in reproductive organ development at high planting density . However , the small grain size of d61-7 counters any increase in grain yield , leading to the same grain yield as that of wild type even at high density . We therefore produced transgenic rice with partial suppression of endogenous OsBRI1 expression to obtain the erect-leaf phenotype without grain changes . The estimated grain yield of these transformants was about 30% higher than that of wild type at high density . These results demonstrate the feasibility of generating erect-leaf plants by modifying the expression of the brassinosteroid receptor gene in transgenic rice plants .
Matching Sentences:
[ Sen. 2, subscore: 2.00 ]: We have identified nine d61 alleles , the weakest of which , d61-7 , confers agronomically important traits such as semidwarf stature and erect leaves .
[ Sen. 4, subscore: 2.00 ]: The biomass of wild type was 38% higher than that of d61-7 at harvest under conventional planting density because of the dwarfism of d61-7 .
[ Sen. 1, subscore: 1.00 ]: The rice ( Oryza sativa ) dwarf mutant d61 phenotype is caused by loss of function of a rice BRASSINOSTEROID INSENSITIVE1 ortholog , OsBRI1 .
[ Sen. 3, subscore: 1.00 ]: Because erect-leaf habit is considered to increase light capture for photosynthesis , we compared the biomass and grain production of wild-type and d61-7 rice .
[ Sen. 5, subscore: 1.00 ]: However , the biomass of d61-7 was 35% higher than that of wild type at high planting density .
[ Sen. 6, subscore: 1.00 ]: The grain yield of wild type reached a maximum at middensity , but the yield of d61-7 continued to increase with planting density .
[ Sen. 7, subscore: 1.00 ]: These results indicate that d61-7 produces biomass more effectively than wild type , and consequently more effectively assimilates the biomass in reproductive organ development at high planting density .
[ Sen. 8, subscore: 1.00 ]: However , the small grain size of d61-7 counters any increase in grain yield , leading to the same grain yield as that of wild type even at high density .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 5.00
Title: Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint .
Author: Yamamuro C Ihara Y Wu X Noguchi T Fujioka S Takatsuto S Ashikari M Kitano H Matsuoka M
Journal: Plant Cell Citation: V : 12 ( 9 ) P : 1591-606 Year: 2000 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub11006334 Accession (PMID): 11006334
Abstract: Brassinosteroids ( BRs ) are plant growth-promoting natural products required for plant growth and development . Physiological studies have demonstrated that exogenous BR , alone or in combination with auxin , enhance bending of the lamina joint of rice . However , little is known about the function of endogenous BR in rice or other grass species . We report here the phenotypical and molecular characterization of a rice dwarf mutant , d61 , that is less sensitive to BR compared to the wild type . We cloned a rice gene , OsBRI1 , with extensive sequence similarity to that of the Arabidopsis BRI gene , which encodes a putative BR receptor kinase . Linkage analysis showed that the OsBRI1 gene is closely linked to the d61 locus . Single nucleotide substitutions found at different sites of the d61 alleles would give rise to amino acid changes in the corresponding polypeptides . Furthermore , introduction of the entire OsBRI1 coding region , including the 5 and 3 flanking sequences , into d61 plants complemented the mutation to display the wild-type phenotype . Transgenic plants carrying the antisense strand of the OsBRI1 transcript showed similar or even more severe phenotypes than those of the d61 mutants . Our results show that OsBRI1 functions in various growth and developmental processes in rice , including ( 1 ) internode elongation , by inducing the formation of the intercalary meristem and the longitudinal elongation of internode cells ; ( 2 ) bending of the lamina joint ; and ( 3 ) skotomorphogenesis .
Matching Sentences:
[ Sen. 4, subscore: 1.00 ]: We report here the phenotypical and molecular characterization of a rice dwarf mutant , d61 , that is less sensitive to BR compared to the wild type .
[ Sen. 6, subscore: 1.00 ]: Linkage analysis showed that the OsBRI1 gene is closely linked to the d61 locus .
[ Sen. 7, subscore: 1.00 ]: Single nucleotide substitutions found at different sites of the d61 alleles would give rise to amino acid changes in the corresponding polypeptides .
[ Sen. 8, subscore: 1.00 ]: Furthermore , introduction of the entire OsBRI1 coding region , including the 5 and 3 flanking sequences , into d61 plants complemented the mutation to display the wild-type phenotype .
[ Sen. 9, subscore: 1.00 ]: Transgenic plants carrying the antisense strand of the OsBRI1 transcript showed similar or even more severe phenotypes than those of the d61 mutants .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 4.00
Title: The role of OsBRI1 and its homologous genes , OsBRL1 and OsBRL3 , in rice .
Author: Nakamura A Fujioka S Sunohara H Kamiya N Hong Z Inukai Y Miura K Takatsuto S Yoshida S Ueguchi-Tanaka M Hasegawa Y Kitano H Matsuoka M
Journal: Plant Physiol . Citation: V : 140 ( 2 ) P : 580-90 Year: 2006 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub16407447 Accession (PMID): 16407447
Abstract: Since first identifying two alleles of a rice ( Oryza sativa ) brassinosteroid ( BR ) -insensitive mutant , d61 , that were also defective in an orthologous gene in Arabidopsis ( Arabidopsis thaliana ) BRASSINOSTEROID INSENSITIVE1 ( BRI1 ) , we have isolated eight additional alleles , including null mutations , of the rice BRI1 gene OsBRI1 . The most severe mutant , d61-4 , exhibited severe dwarfism and twisted leaves , although pattern formation and differentiation were normal This severe shoot phenotype was caused mainly by a defect in cell elongation and the disturbance of cell division after the determination of cell fate . In contrast to its severe shoot phenotype , the d61-4 mutant had a mild root phenotype . Concomitantly , the accumulation of castasterone , the active BR in rice , was up to 30-fold greater in the shoots , while only 1 . 5-fold greater in the roots . The homologous genes for OsBRI1 , OsBRL1 and OsBRL3 , were highly expressed in roots but weakly expressed in shoots , and their expression was higher in d61-4 than in the wild type . Based on these observations , we conclude that OsBRI1 is not essential for pattern formation or organ initiation , but is involved in organ development through controlling cell division and elongation . In addition , OsBRL1 and OsBRL3 are at least partly involved in BR perception in the roots .
Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Since first identifying two alleles of a rice ( Oryza sativa ) brassinosteroid ( BR ) -insensitive mutant , d61 , that were also defective in an orthologous gene in Arabidopsis ( Arabidopsis thaliana ) BRASSINOSTEROID INSENSITIVE1 ( BRI1 ) , we have isolated eight additional alleles , including null mutations , of the rice BRI1 gene OsBRI1 .
[ Sen. 2, subscore: 1.00 ]: The most severe mutant , d61-4 , exhibited severe dwarfism and twisted leaves , although pattern formation and differentiation were normal This severe shoot phenotype was caused mainly by a defect in cell elongation and the disturbance of cell division after the determination of cell fate .
[ Sen. 3, subscore: 1.00 ]: In contrast to its severe shoot phenotype , the d61-4 mutant had a mild root phenotype .
[ Sen. 5, subscore: 1.00 ]: The homologous genes for OsBRI1 , OsBRL1 and OsBRL3 , were highly expressed in roots but weakly expressed in shoots , and their expression was higher in d61-4 than in the wild type .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 3.00
Title: Function of alpha subunit of heterotrimeric G protein in brassinosteroid response of rice plants .
Author: Oki K Kitagawa K Fujisawa Y Kato H Iwasaki Y
Journal: Plant Signal Behav Citation: V : 4 P : 126-8 Year: 2009 Type: PubMed-not-MEDLINE
Literature: oryza Field: abstract Doc ID: pub19649188 Accession (PMID): 19649188
Abstract: The alpha subunit of heterotrimeric G-proteins ( G alpha ) is involved in a broad range of aspects of the brassinosteroid ( BR ) response , such as the enhancement of lamina bending . However , it has been suggested from epistatic analysis of d1 and d61 , which are mutants deficient for G alpha and the BR receptor BRI1 , that G alpha and BRI1 may function via distinct pathways in many cases . In this study , we investigated further the genetic interaction between G alpha and BRI1 . We report the analysis of transformants of T65d1 and T65d1/d61-7 into which were introduced a constitutively active form of G alpha , Q223L . The application of 24-epi-brassinolide ( 24-epiBL ) to T65d1 expressing Q223L still resulted in elongation of the coleoptile and , in fact , it was enhanced over the wild-type plant ( WT ) level in a concentration dependent manner . In T65d1/d61-7 expressing Q223L , the seed size was enlarged over that of d61-7 due to activation of G alpha . These results suggest that Q223L is able to augment the BR response in response to 24-epiBL and also that Q223L functions independently of BRI1 in the process of determining seed morphology , given that Q223L was functional in the BRI1-deficient mutant , d61-7 .
Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: However , it has been suggested from epistatic analysis of d1 and d61 , which are mutants deficient for G alpha and the BR receptor BRI1 , that G alpha and BRI1 may function via distinct pathways in many cases .
[ Sen. 6, subscore: 1.00 ]: In T65d1/d61-7 expressing Q223L , the seed size was enlarged over that of d61-7 due to activation of G alpha .
[ Sen. 7, subscore: 1.00 ]: These results suggest that Q223L is able to augment the BR response in response to 24-epiBL and also that Q223L functions independently of BRI1 in the process of determining seed morphology , given that Q223L was functional in the BRI1-deficient mutant , d61-7 .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 2.00
Title: DWARF AND LOW-TILLERING Acts as a Direct Downstream Target of a GSK3/SHAGGY-Like Kinase to Mediate Brassinosteroid Responses in Rice .
Author: Tong H Liu L Jin Y Du L Yin Y Qian Q Zhu L Chu C
Journal: Plant Cell Citation: V : 24 P : 2562-77 Year: 2012 Type: In-Data-Review
Literature: oryza Field: abstract Doc ID: pub22685166 Accession (PMID): 22685166
Abstract: In Arabidopsis thaliana , the GSK3/SHAGGY-like kinase BRASSINOSTEROID-INSENSITIVE2 ( BIN2 ) plays a critical role in the brassinosteroid ( BR ) signaling pathway by negatively regulating the activities of bri1-EMS-SUPPRESSOR1/BRASSINAZOLE-RESISTANT1 family transcription factors that regulate the expression of downstream BR-responsive genes . In this study , we analyzed the function of a rice ( Oryza sativa ) GSK3/SHAGGY-like kinase ( GSK2 ) , which is one of the orthologs of BIN2 . Overexpression of GSK2 ( Go ) led to plants with typical BR loss-of-function phenotypes , and suppression of GSK2 resulted in enhanced BR signaling phenotypes . DWARF AND LOW-TILLERING ( DLT ) is a positive regulator that mediates several BR responses in rice . Suppression of DLT can enhance the phenotypes of BR receptor mutant d61-1 , and overexpression of DLT obviously suppressed the BR loss-of-function phenotypes of both d61-1 and Go , suggesting that DLT functions downstream of GSK2 to modulate BR responses . Indeed , GSK2 can interact with DLT and phosphorylate DLT . Moreover , brassinolide treatment can induce the dephosphorylation of DLT , leading to the accumulation of dephosphorylated DLT protein . In GSK2 transgenic plants , the DLT phosphorylation level is dictated by the GSK2 level . These results demonstrate that DLT is a GSK2 substrate , further reinforcing that the BIN2/GSK2 kinase has multiple substrates that carry out various BR responses .
Matching Sentences:
[ Sen. 5, subscore: 2.00 ]: Suppression of DLT can enhance the phenotypes of BR receptor mutant d61-1 , and overexpression of DLT obviously suppressed the BR loss-of-function phenotypes of both d61-1 and Go , suggesting that DLT functions downstream of GSK2 to modulate BR responses .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Goto:

© Textpresso Sun May 12 17:04:20 2024 .