About Textpresso Categories/Ontology Copyright Downloads Feedback Home Query Language Search User Guide
Enter keyword(s) and/or category/ies. Selecting categories for a query makes a search more specific. For example, you can retrieve sentences that contain the word HSN and a Oryza sativa gene name by typing the keyword 'SPW1' and choosing the category 'gene (Oryza sativa)'. A category hit occurs when a particular word or phrase in the sentence is defined as a member of a particular category. Categories will be concatenated by a Boolean 'and' operation to other categories and keyword(s) if present. To search for terms in categories, click on the Categories/Ontology link above.
Keywords
Separate multiple, required keywords by white spaces (Boolean 'and').
Separate multiple, alternative keywords by a comma with no white spaces (Boolean 'or').
Enter phrases in double quotes, and put a '-' sign in front of words which are to be excluded.
Keyword Specification
AND/OR
Categories
Fields
Search Scope
Search Mode
Sort by
 
Narrow your search results with filter:
Put a '+' sign in front of words which have to be included, a '-' sign in front of words which have to be excluded. Enter the field of the word, viz author, title, year, journal, abstract, type or sentence in square brackets. Enter phrases in double quotes.
For example, to find all the papers in the search result that have Jack as author, but not John, enter +Jack-John[author]. To exclude all papers that have the phrase double mutant in title, enter -"double mutant"[title]. You can combine several filters and enter something like +Jack-John[author] -"double mutant"[title] +1994[year] -review[type].
Click on Filter! button to activate the filter.

Goto:
of 19
Display options:
author: on | off accession: on | off type: on | off abstract: on | off title: on | off
citation: on | off journal: on | off year: on | off supplementals: on | off textlinks: on | off
searchterm-highlighting: on | off matching sentences: none 1 5 10 entries/page: 5 10 20 50
201 matches found in 91 documents. Search time: 0.121 seconds.
Global links/files: all results in endnote all results in print version
Score: 14.00
Title: d14 , a strigolactone-insensitive mutant of rice , shows an accelerated outgrowth of tillers .
Author: Arite T Umehara M Ishikawa S Hanada A Maekawa M Yamaguchi S Kyozuka J
Journal: Plant Cell Physiol Citation: V : 50 P : 1416-24 Year: 2009 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub19542179 Accession (PMID): 19542179
Abstract: Recent studies using highly branched mutants of pea , Arabidopsis and rice have demonstrated that strigolactones , a group of terpenoid lactones , act as a new hormone class , or its biosynthetic precursors , in inhibiting shoot branching . Here , we provide evidence that DWARF14 ( D14 ) inhibits rice tillering and may act as a new compo-nent of the strigolactone-dependent branching inhibition pathway . The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3 , respectively . The d10-1 d14-1 double mutant is phenotypically indistinguishable from the d10-1 and d14-1 single mutants , consistent with the idea that D10 and D14 function in the same pathway . However , unlike with d10 , the d14 branching phenotype could not be rescued by exogenous strigolactones . In addition , the d14 mutant contained a higher level of 2-epi-5-deoxystrigol than the wild type . Positional cloning revealed that D14 encodes a protein of the alpha/beta-fold hydrolase superfamily , some members of which play a role in metabolism or signaling of plant hormones . We propose that D14 functions downstream of strigolactone synthesis , as a component of hormone signaling or as an enzyme that participates in the conversion of strigolactones to the bioactive form .
Matching Sentences:
[ Sen. 4, subscore: 6.00 ]: The d10-1 d14-1 double mutant is phenotypically indistinguishable from the d10-1 and d14-1 single mutants , consistent with the idea that D10 and D14 function in the same pathway .
[ Sen. 3, subscore: 2.00 ]: The d14 mutant exhibits increased shoot branch-ing with reduced plant height like the previously characterized strigolactone-deficient and -insensitive mutants d10 and d3 , respectively .
[ Sen. 5, subscore: 2.00 ]: However , unlike with d10 , the d14 branching phenotype could not be rescued by exogenous strigolactones .
[ Sen. 2, subscore: 1.00 ]: Here , we provide evidence that DWARF14 ( D14 ) inhibits rice tillering and may act as a new compo-nent of the strigolactone-dependent branching inhibition pathway .
[ Sen. 6, subscore: 1.00 ]: In addition , the d14 mutant contained a higher level of 2-epi-5-deoxystrigol than the wild type .
[ Sen. 7, subscore: 1.00 ]: Positional cloning revealed that D14 encodes a protein of the alpha/beta-fold hydrolase superfamily , some members of which play a role in metabolism or signaling of plant hormones .
[ Sen. 8, subscore: 1.00 ]: We propose that D14 functions downstream of strigolactone synthesis , as a component of hormone signaling or as an enzyme that participates in the conversion of strigolactones to the bioactive form .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 13.00
Title: Study of novel d1 alleles , defective mutants of the alpha subunit of heterotrimeric G-protein in rice .
Author: Oki K Inaba N Kitano H Takahashi S Fujisawa Y Kato H Iwasaki Y
Journal: Genes Genet Syst Citation: V : 84 P : 35-42 Year: 2009 Type: In-Process
Literature: oryza Field: abstract Doc ID: pub19420799 Accession (PMID): 19420799
Abstract: It has been shown that the disruption of the alpha-subunit gene of heterotorimeric G-proteins ( Galpha ) results in dwarf traits , the erection of leaves and the setting of small seeds in rice . These mutants are called d1 . We have studied the expression profiles of the transcripts and translation products of rice Galpha in ten alleles of d1 including five additional alleles newly identified . By RT-PCR , the transcripts of the Galpha gene were detected in the all d1 alleles . By western blot , the Galpha proteins were not detected in the plasma membrane fractions of the d1 alleles with the exception of d1-4 . In d1-4 , one amino acid change in the GTP-binding box A of the Galpha protein was occurred and even in this case the Galpha protein was only just detectable in the plasma membrane fraction . Given that the Galpha protein did not accumulate in the plasma membrane fraction in d1-8 which has a deletion of just a single amino acid in the Galpha protein , it is likely that a proper conformation of the Galpha is necessary for accumulation of Galpha protein in the plasma membrane . Nine alleles of d1 showed a severer phenotype whilst d1-4 exhibited a mild phenotype with respect to seed size and elongation pattern of internodes . As brassinosteroid signaling was known to be partially impaired in d1s , the sensitivity to 24-epibrassinolide ( 24-epiBL ) was compared among d1 alleles in a T65 genetic background . Only d1-4 showed responses similar to wild type rice . The results show that the d1-4 mutant is a mild allele in terms of the phenotype and mild hyposensitivity to the exogenously applied 24-epiBL .
Matching Sentences:
[ Sen. 5, subscore: 2.00 ]: By western blot , the Galpha proteins were not detected in the plasma membrane fractions of the d1 alleles with the exception of d1-4 .
[ Sen. 8, subscore: 2.00 ]: Nine alleles of d1 showed a severer phenotype whilst d1-4 exhibited a mild phenotype with respect to seed size and elongation pattern of internodes .
[ Sen. 9, subscore: 2.00 ]: As brassinosteroid signaling was known to be partially impaired in d1s , the sensitivity to 24-epibrassinolide ( 24-epiBL ) was compared among d1 alleles in a T65 genetic background .
[ Sen. 2, subscore: 1.00 ]: These mutants are called d1 .
[ Sen. 3, subscore: 1.00 ]: We have studied the expression profiles of the transcripts and translation products of rice Galpha in ten alleles of d1 including five additional alleles newly identified .
[ Sen. 4, subscore: 1.00 ]: By RT-PCR , the transcripts of the Galpha gene were detected in the all d1 alleles .
[ Sen. 6, subscore: 1.00 ]: In d1-4 , one amino acid change in the GTP-binding box A of the Galpha protein was occurred and even in this case the Galpha protein was only just detectable in the plasma membrane fraction .
[ Sen. 7, subscore: 1.00 ]: Given that the Galpha protein did not accumulate in the plasma membrane fraction in d1-8 which has a deletion of just a single amino acid in the Galpha protein , it is likely that a proper conformation of the Galpha is necessary for accumulation of Galpha protein in the plasma membrane .
[ Sen. 10, subscore: 1.00 ]: Only d1-4 showed responses similar to wild type rice .
[ Sen. 11, subscore: 1.00 ]: The results show that the d1-4 mutant is a mild allele in terms of the phenotype and mild hyposensitivity to the exogenously applied 24-epiBL .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 11.00
Title: Rice dwarf mutant d1 , which is defective in the alpha subunit of the heterotrimeric G protein , affects gibberellin signal transduction .
Author: Ueguchi-Tanaka M Fujisawa Y Kobayashi M Ashikari M Iwasaki Y Kitano H Matsuoka M
Journal: Proc . Natl . Acad . Sci . USA Citation: V : 97 ( 21 ) P : 11638-43 Year: 2000 Type: ARTICLE
Literature: oryza Field: abstract Doc ID: pub11027362 Accession (PMID): 11027362
Abstract: Previously , we reported that the rice dwarf mutant , d1 , is defective in the alpha subunit of the heterotrimeric G protein ( Galpha ) . In the present study , gibberellin ( GA ) signaling in d1 and the role of the Galpha protein in the GA-signaling pathway were investigated . Compared with the wild type , GA induction of alpha-amylase activity in aleurone cells of d1 was greatly reduced . Relative to the wild type , the GA ( 3 ) -treated aleurone layer of d1 had lower expression of Ramy1A , which encodes alpha-amylase , and OsGAMYB , which encodes a GA-inducible transcriptional factor , and no increase in expression of Ca ( 2 + ) -ATPase . However , in the presence of high GA concentrations , alpha-amylase induction occurred even in d1 . The GA sensitivity of second leaf sheath elongation in d1 was similar to that of the wild type in terms of dose responsiveness , but the response of internode elongation to GA was much lower in d1 . Furthermore , Os20ox expression was up-regulated , and the GA content was elevated in the stunted internodes of d1 . All these results suggest that d1 affects a part of the GA-signaling pathway , namely the induction of alpha-amylase in the aleurone layer and internode elongation . In addition , a double mutant between d1 and another GA-signaling mutant , slr , revealed that SLR is epistatic to the D1 , supporting that the Galpha protein is involved in GA signaling . However , the data also provide evidence for the presence of an alternative GA-signaling pathway that does not involve the Galpha protein . It is proposed that GA signaling via the Galpha protein may be more sensitive than that of the alternative pathway , as indicated by the low GA responsiveness of this Galpha-independent pathway .
Matching Sentences:
[ Sen. 6, subscore: 2.00 ]: The GA sensitivity of second leaf sheath elongation in d1 was similar to that of the wild type in terms of dose responsiveness , but the response of internode elongation to GA was much lower in d1 .
[ Sen. 9, subscore: 2.00 ]: In addition , a double mutant between d1 and another GA-signaling mutant , slr , revealed that SLR is epistatic to the D1 , supporting that the Galpha protein is involved in GA signaling .
[ Sen. 1, subscore: 1.00 ]: Previously , we reported that the rice dwarf mutant , d1 , is defective in the alpha subunit of the heterotrimeric G protein ( Galpha ) .
[ Sen. 2, subscore: 1.00 ]: In the present study , gibberellin ( GA ) signaling in d1 and the role of the Galpha protein in the GA-signaling pathway were investigated .
[ Sen. 3, subscore: 1.00 ]: Compared with the wild type , GA induction of alpha-amylase activity in aleurone cells of d1 was greatly reduced .
[ Sen. 4, subscore: 1.00 ]: Relative to the wild type , the GA ( 3 ) -treated aleurone layer of d1 had lower expression of Ramy1A , which encodes alpha-amylase , and OsGAMYB , which encodes a GA-inducible transcriptional factor , and no increase in expression of Ca ( 2 + ) -ATPase .
[ Sen. 5, subscore: 1.00 ]: However , in the presence of high GA concentrations , alpha-amylase induction occurred even in d1 .
[ Sen. 7, subscore: 1.00 ]: Furthermore , Os20ox expression was up-regulated , and the GA content was elevated in the stunted internodes of d1 .
[ Sen. 8, subscore: 1.00 ]: All these results suggest that d1 affects a part of the GA-signaling pathway , namely the induction of alpha-amylase in the aleurone layer and internode elongation .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 11.00
Title: The interactions among DWARF10 , auxin and cytokinin underlie lateral bud outgrowth in rice .
Author: Zhang S Li G Fang J Chen W Jiang H Zou J Liu X Zhao X Li X Chu C Xie Q Jiang X Zhu L
Journal: J Integr Plant Biol Citation: V : 52 P : 626-38 Year: 2010 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub20590993 Accession (PMID): 20590993
Abstract: Previous studies have shown that DWARF10 ( D10 ) is a rice ortholog of MAX4/RMS1/DAD1 , encoding a carotenoid cleavage dioxygenase and functioning in strigolactones/strigolactone-derivatives ( SL ) biosynthesis . Here we use D10 RNA interference ( RNAi ) transgenic plants similar to d10 mutant in phenotypes to investigate the interactions among D10 , auxin and cytokinin in regulating rice shoot branching . Auxin levels in node 1 of both decapitated D10-RNAi and wild type plants decreased significantly , showing that decapitation does reduce endogenous auxin concentration , but decapitation has no clear effects on auxin levels in node 2 of the same plants . This implies that node 1 may be the location where a possible interaction between auxin and D10 gene would be detected . D10 expression in node 1 is inhibited by decapitation , and this inhibition can be restored by exogenous auxin application , indicating that D10 may play an important role in auxin regulation of SL . The decreased expression of most OsPINs in shoot nodes of D10-RNAi plants may cause a reduced auxin transport capacity . Furthermore , effects of auxin treatment of decapitated plants on the expression of cytokinin biosynthetic genes suggest that D10 promotes cytokinin biosynthesis by reducing auxin levels . Besides , in D10-RNAi plants , decreased storage cytokinin levels in the shoot node may partly account for the increased active cytokinin contents , resulting in more tillering phenotypes .
Matching Sentences:
[ Sen. 2, subscore: 3.00 ]: Here we use D10 RNA interference ( RNAi ) transgenic plants similar to d10 mutant in phenotypes to investigate the interactions among D10 , auxin and cytokinin in regulating rice shoot branching .
[ Sen. 5, subscore: 2.00 ]: D10 expression in node 1 is inhibited by decapitation , and this inhibition can be restored by exogenous auxin application , indicating that D10 may play an important role in auxin regulation of SL .
[ Sen. 1, subscore: 1.00 ]: Previous studies have shown that DWARF10 ( D10 ) is a rice ortholog of MAX4/RMS1/DAD1 , encoding a carotenoid cleavage dioxygenase and functioning in strigolactones/strigolactone-derivatives ( SL ) biosynthesis .
[ Sen. 3, subscore: 1.00 ]: Auxin levels in node 1 of both decapitated D10-RNAi and wild type plants decreased significantly , showing that decapitation does reduce endogenous auxin concentration , but decapitation has no clear effects on auxin levels in node 2 of the same plants .
[ Sen. 4, subscore: 1.00 ]: This implies that node 1 may be the location where a possible interaction between auxin and D10 gene would be detected .
[ Sen. 6, subscore: 1.00 ]: The decreased expression of most OsPINs in shoot nodes of D10-RNAi plants may cause a reduced auxin transport capacity .
[ Sen. 7, subscore: 1.00 ]: Furthermore , effects of auxin treatment of decapitated plants on the expression of cytokinin biosynthetic genes suggest that D10 promotes cytokinin biosynthesis by reducing auxin levels .
[ Sen. 8, subscore: 1.00 ]: Besides , in D10-RNAi plants , decreased storage cytokinin levels in the shoot node may partly account for the increased active cytokinin contents , resulting in more tillering phenotypes .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Score: 9.00
Title: DWARF10 , an RMS1/MAX4/DAD1 ortholog , controls lateral bud outgrowth in rice .
Author: Arite T Iwata H Ohshima K Maekawa M Nakajima M Kojima M Sakakibara H Kyozuka J
Journal: Plant J Citation: V : 51 P : 1019-29 Year: 2007 Type: MEDLINE
Literature: oryza Field: abstract Doc ID: pub17655651 Accession (PMID): 17655651
Abstract: Plant architecture is mostly determined by shoot branching patterns . Apical dominance is a well-known control mechanism in the development of branching patterns , but little is known regarding its role in monocots such as rice . Here , we show that the concept of apical dominance can be applied to tiller bud outgrowth of rice . In dwarf10 ( d10 ) , an enhanced branching mutant of rice , apical dominance can be observed , but the inhibitory effects of the apical meristem was reduced . D10 is a rice ortholog of MAX4/RMS1/DAD1 that encodes a carotenoid cleavage dioxygenase 8 and is supposed to be involved in the synthesis of an unidentified inhibitor of shoot branching . D10 expression predominantly occurs in vascular cells in most organs . Real-time polymerase chain reaction analysis revealed that accumulation of D10 mRNA is induced by exogenous auxin . Moreover , D10 expression is upregulated in six branching mutants , d3 , d10 , d14 , d17 , d27 and high tillering dwarf ( htd1 ) . No such effects were found for D3 or HTD1 , the MAX2 and MAX3 orthologs , respectively , of rice . These findings imply that D10 transcription might be a critical step in the regulation of the branching inhibitor pathway . In addition , we present observations that suggest that FINE CULM1 ( FC1 ) , a rice ortholog of teosinte branched 1 ( tb1 ) , possibly works independently of the branching inhibitor pathway .
Matching Sentences:
[ Sen. 8, subscore: 4.00 ]: Moreover , D10 expression is upregulated in six branching mutants , d3 , d10 , d14 , d17 , d27 and high tillering dwarf ( htd1 ) .
[ Sen. 4, subscore: 1.00 ]: In dwarf10 ( d10 ) , an enhanced branching mutant of rice , apical dominance can be observed , but the inhibitory effects of the apical meristem was reduced .
[ Sen. 5, subscore: 1.00 ]: D10 is a rice ortholog of MAX4/RMS1/DAD1 that encodes a carotenoid cleavage dioxygenase 8 and is supposed to be involved in the synthesis of an unidentified inhibitor of shoot branching .
[ Sen. 6, subscore: 1.00 ]: D10 expression predominantly occurs in vascular cells in most organs .
[ Sen. 7, subscore: 1.00 ]: Real-time polymerase chain reaction analysis revealed that accumulation of D10 mRNA is induced by exogenous auxin .
[ Sen. 10, subscore: 1.00 ]: These findings imply that D10 transcription might be a critical step in the regulation of the branching inhibitor pathway .
Supplemental links/files: reference in endnote online text related articles pubmed citation
Goto:

© Textpresso Thu Apr 25 17:53:12 2024 .