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Score: 11.00 |
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| Title: Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes .
| | Author: Lee SK Song MY Seo YS Kim HK Ko S Cao PJ Suh JP Yi G Roh JH Lee S An G Hahn TR Wang GL Ronald P Jeon JS | | Journal: Genetics Citation: V : 181 P : 1627-38 Year: 2009 Type: In-Process | | Literature: oryza Field: abstract Doc ID: pub19153255 Accession (PMID): 19153255 | Matching Sentences:
[ Sen. 3, subscore: 4.00 ]: Genetic and phenotypic analyses of 2014 F2 progeny from a mapping population derived from a cross between IR50 , a susceptible rice cultivar , and the RIL260 line carrying Pi5 enabled us to narrow down the Pi5 locus to a 130-kb interval Sequence analysis of this genomic region identified two candidate genes , Pi5-1 and Pi5-2 , which encode proteins carrying three motifs characteristic of R genes : an N-terminal coiled-coil ( CC ) motif , a nucleotide-binding ( NB ) domain , and a leucine-rich repeat ( LRR ) motif .
[ Sen. 4, subscore: 2.00 ]: In genetic transformation experiments of a susceptible rice cultivar , neither the Pi5-1 nor the Pi5-2 gene was found to confer resistance to M oryzae .
[ Sen. 6, subscore: 2.00 ]: Gene expression analysis revealed that Pi5-1 transcripts accumulate after pathogen challenge , whereas the Pi5-2 gene is constitutively expressed .
[ Sen. 2, subscore: 1.00 ]: To understand the molecular basis of Pi5-mediated resistance to M oryzae , we cloned the resistance ( R ) gene at this locus using a map-based cloning strategy .
[ Sen. 5, subscore: 1.00 ]: In contrast , transgenic rice plants expressing both of these genes , generated by crossing transgenic lines carrying each gene individually , conferred Pi5-mediated resistance to M oryzae .
[ Sen. 7, subscore: 1.00 ]: These results indicate that the presence of these two genes is required for rice Pi5-mediated resistance to M oryzae .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 9.00 |
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| Title: A novel blast resistance gene , Pi54rh cloned from wild species of rice , Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae .
| | Author: Das A Soubam D Singh PK Thakur S Singh NK Sharma TR | | Journal: Funct Integr Genomics Citation: V : 12 P : 215-28 Year: 2012 Type: In-Process | | Literature: oryza Field: abstract Doc ID: pub22592658 Accession (PMID): 22592658 | Matching Sentences:
[ Sen. 2, subscore: 2.00 ]: In our effort to identify more effective forms of this gene , we isolated an orthologue of Pi54 named as Pi54rh from the blast-resistant wild species of rice , Oryza rhizomatis , using allele mining approach and validated by complementation .
[ Sen. 1, subscore: 1.00 ]: The dominant rice blast resistance gene , Pi54 confers resistance to Magnaporthe oryzae in different parts of India .
[ Sen. 3, subscore: 1.00 ]: The Pi54rh belongs to CC-NBS-LRR family of disease resistance genes with a unique Zinc finger ( C ( 3 ) H type ) domain .
[ Sen. 4, subscore: 1.00 ]: The 1 , 447 bp Pi54rh transcript comprises of 101 bp 5-UTR , 1 , 083 bp coding region and 263 bp 3-UTR , driven by pathogen inducible promoter .
[ Sen. 5, subscore: 1.00 ]: We showed the extracellular localization of Pi54rh protein and the presence of glycosylation , myristoylation and phosphorylation sites which implicates its role in signal transduction process .
[ Sen. 7, subscore: 1.00 ]: The Pi54rh was found to express constitutively at basal level in the leaves , but upregulates 3 . 8-fold at 96 h post-inoculation with the pathogen .
[ Sen. 8, subscore: 1.00 ]: Functional validation of cloned Pi54rh gene using complementation test showed high degree of resistance to seven isolates of M oryzae collected from different geographical locations of India .
[ Sen. 9, subscore: 1.00 ]: In this study , for the first time , we demonstrated that a rice blast resistance gene Pi54rh cloned from wild species of rice provides broad spectrum resistance to M oryzae hence can be used in rice improvement breeding programme .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 7.00 |
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| Title: Genetic and physical mapping of Pi5 ( t ) , a locus associated with broad-spectrum resistance to rice blast | | Author: Jeon JS Chen D Yi GH Wang GL Ronald PC .
| | Journal: Mol . Genet . Genomics Citation: V : 269 ( 2 ) P : 280-9 Year: 2003 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12756540 Accession (PMID): 12756540 | Matching Sentences:
[ Sen. 9, subscore: 2.00 ]: DNA gel-blot analyses indicated that the region around Pi3 ( t ) is identical to that of Pi5 ( t ) , suggesting that Pi3 ( t ) and Pi5 ( t ) are the same resistance gene .
[ Sen. 1, subscore: 1.00 ]: To gain an understanding of the molecular basis for resistance to rice blast ( Magnaporthe grisea ) , we have initiated a project to clone Pi5 ( t ) , a locus associated with broad-spectrum resistance to diverse blast isolates .
[ Sen. 2, subscore: 1.00 ]: AFLP-derived markers linked to Pi5 ( t ) -mediated resistance were isolated using bulked segregant analysis of F ( 2 ) populations generated by crossing three recombinant inbred lines ( RILs ) , RIL125 , RIL249 , and RIL260 with the susceptible line CO39 .
[ Sen. 6, subscore: 1.00 ]: Using these resources Pi5 ( t ) was mapped to a 170-kb interval , and a contiguous set of BIBAC clones spanning this region was constructed .
[ Sen. 7, subscore: 1.00 ]: It had previously been suggested that Pi3 ( t ) and Pi5 ( t ) might be allelic , due to their identical resistance spectrum and tight linkage .
[ Sen. 8, subscore: 1.00 ]: We therefore compared genomic regions for lines containing Pi3 ( t ) using the Pi5 ( t ) -linked markers .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 6.00 |
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| Title: Use of Pi5 ( t ) markers in marker-assisted selection to screen for cultivars with resistance to Magnaporthe grisea .
| | Author: Yi G Lee SK Hong YK Cho YC Nam MH Kim SC Han SS Wang GL Hahn TR Ronald PC Jeon JS .
| | Journal: Theor . Appl . Genet . Citation: V : 109 ( 5 ) P : 978-85 Year: 2004 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub15141293 Accession (PMID): 15141293 | Matching Sentences:
[ Sen. 2, subscore: 1.00 ]: The rice Pi5 ( t ) locus confers broad-spectrum resistance to Magnaporthe grisea , the causal agent of rice blast disease .
[ Sen. 3, subscore: 1.00 ]: It has been hypothesized that the Pi5 ( t ) locus carries the same gene as that encoded by the Pi3 ( t ) and Pii ( t ) loci .
[ Sen. 4, subscore: 1.00 ]: We developed three PCR-based dominant markers ( JJ80-T3 , JJ81-T3 , and JJ113-T3 ) from three previously identified BIBAC clones-JJ80 , JJ81 , and JJ113-that are linked to the Pi5 ( t ) locus .
[ Sen. 5, subscore: 1.00 ]: PCR analysis of 24 monogenic lines revealed that these markers are present only in lines that carry Pi5 ( t ) , Pi3 ( t ) , and Pii ( t ) .
[ Sen. 6, subscore: 1.00 ]: PCR and DNA gel-blot analysis of candidate resistance lines using JJ80-T3 , JJ81-T3 , and JJ113-T3 indicated that Tetep is the likely donor of Pi5 ( t ) .
[ Sen. 9, subscore: 1.00 ]: The genomic structure of three of these resistant varieties ( ie , IR72 , Taebaeg , Jahyangdo ) is most similar to that of Pi5 ( t ) .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 3.00 |
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| Title: Molecular mapping of the blast resistance genes Pi2-1 and Pi51 ( t ) in the durably resistant rice Tianjingyeshengdao .
| | Author: Wang Y Wang D Deng X Liu J Sun P Liu Y Huang H Jiang N Kang H Ning Y Wang Z Xiao Y Liu X Liu E Dai L Wang GL | | Journal: Phytopathology Citation: V : 102 P : 779-86 Year: 2012 Type: In-Process | | Literature: oryza Field: abstract Doc ID: pub22779744 Accession (PMID): 22779744 | Matching Sentences:
[ Sen. 5, subscore: 1.00 ]: Two QTL clusters on chromosome 6 and 12 were named Pi2-1 and Pi51 ( t ) , respectively .
[ Sen. 7, subscore: 1.00 ]: Pi51 ( t ) was only detected in the natural blast nursery and explained 3 . 67 to 10 . 37% of the phenotypic variation .
[ Sen. 9, subscore: 1.00 ]: Identification of the markers linked to both Pi2-1 and Pi51 ( t ) in this study should be useful for marker-aided selection in rice breeding programs as well as for molecular cloning of the identified resistance genes .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 2.00 |
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| Title: The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice .
| | Author: Gupta SK Rai AK Kanwar SS Chand D Singh NK Sharma TR | | Journal: J Exp Bot Citation: V : 63 P : 757-72 Year: 2012 Type: In-Data-Review | | Literature: oryza Field: abstract Doc ID: pub22058403 Accession (PMID): 22058403 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: The Pi54 gene ( Pi-k ( h ) ) confers a high degree of resistance to diverse strains of the fungus Magnaporthe oryzae .
[ Sen. 2, subscore: 1.00 ]: In order to understand the genome-wide co-expression of genes in the transgenic rice plant Taipei 309 ( TP ) containing the Pi54 gene , microarray analysis was performed at 72 h post-inoculation of the M oryzae strain PLP-1 .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 2.00 |
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| Title: Identification of the novel recessive gene pi55 ( t ) conferring resistance to Magnaporthe oryzae .
| | Author: He X Liu X Wang L Wang L Lin F Cheng Y Chen Z Liao Y Pan Q | | Journal: Sci China Life Sci Citation: V : 55 P : 141-9 Year: 2012 Type: MEDLINE | | Literature: oryza Field: abstract Doc ID: pub22415685 Accession (PMID): 22415685 | Matching Sentences:
[ Sen. 6, subscore: 1.00 ]: Given that no major R gene was mapped to this interval , the novel R gene was designated as pi55 ( t ) .
[ Sen. 7, subscore: 1.00 ]: Out of 26 candidate genes predicted in the region based on the reference genomic sequence of the cultivar Nipponbare , two genes that encode a leucine-rich repeat-containing protein and heavy-metal-associated domain-containing protein , respectively , were suggested as the most likely candidates for pi55 ( t ) .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
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| Title: Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice ( Oryza sativa ) .
| | Author: Sirithunya P Tragoonrung S Vanavichit A Pa-In N Vongsaprom C Toojinda T | | Journal: DNA Res .
Citation: V : 9 ( 3 ) P : 79-88 Year: 2002 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub12168952 Accession (PMID): 12168952 | Matching Sentences:
[ Sen. 8, subscore: 1.00 ]: In particular , the QTL ( ch9 ) was mapped near the Pi5 ( t ) locus .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: The highly charged region of plant beta-type phosphatidylinositol 4-kinase is involved in membrane targeting and phospholipid binding .
| | Author: Lou Y Ma H Lin WH Chu ZQ Mueller-Roeber B Xu ZH Xue HW .
| | Journal: Plant Mol . Biol . Citation: V : 60 ( 5 ) P : 729-46 Year: 2006 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub16649109 Accession (PMID): 16649109 | Matching Sentences:
[ Sen. 9, subscore: 1.00 ]: Recombinant PPC peptide , expressed in E coli , strongly binds phosphatidic acid , PI and PI4P , but not phosphatidylcholine , PI5P , or PI ( 4 , 5 ) P2 in vitro , providing insights into potential mechanisms for regulating sub-cellular localization and lipid binding for the plant beta-type PI4Ks .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: The identification of Pi50 ( t ) , a new member of the rice blast resistance Pi2/Pi9 multigene family .
| | Author: Zhu X Chen S Yang J Zhou S Zeng L Han J Su J Wang L Pan Q | | Journal: Theor Appl Genet Citation: V : 124 P : 1295-304 Year: 2012 Type: In-Process | | Literature: oryza Field: abstract Doc ID: pub22270148 Accession (PMID): 22270148 | Matching Sentences:
[ Sen. 6, subscore: 1.00 ]: As a result , the gene has been given the designation Pi50 ( t ) .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: Fructose 1 , 6-bisphosphate aldolase activity in leaves of a rice mutant selected for enhanced lysine .
| | Author: Schaeffer GW Sharpe FT Sicher RC .
| | Journal: Phytochemistry Citation: V : 46 ( 8 ) P : 1335-8 Year: 1997 Type: ARTICLE | | Literature: oryza Field: abstract Doc ID: pub9419899 Accession (PMID): 9419899 | Matching Sentences:
[ Sen. 3, subscore: 1.00 ]: Tissues of mutant rice , PI564784 , and wild type ( cv Calrose 76 ) it issues were evaluated for aldolase activity .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
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| Title: Genetic and physical mapping of Pi5 ( t ) , a locus associated with broad-spectrum resistance to rice blast | | Author: Jeon JS Chen D Yi GH Wang GL Ronald PC .
| | Journal: Mol . Genet . Genomics Citation: V : 269 ( 2 ) P : 280-9 Year: 2003 Type: ARTICLE | | Literature: oryza Field: title Doc ID: pub12756540 Accession (PMID): 12756540 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Genetic and physical mapping of Pi5 ( t ) , a locus associated with broad-spectrum resistance to rice blast
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: Use of Pi5 ( t ) markers in marker-assisted selection to screen for cultivars with resistance to Magnaporthe grisea .
| | Author: Yi G Lee SK Hong YK Cho YC Nam MH Kim SC Han SS Wang GL Hahn TR Ronald PC Jeon JS .
| | Journal: Theor . Appl . Genet . Citation: V : 109 ( 5 ) P : 978-85 Year: 2004 Type: ARTICLE | | Literature: oryza Field: title Doc ID: pub15141293 Accession (PMID): 15141293 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Use of Pi5 ( t ) markers in marker-assisted selection to screen for cultivars with resistance to Magnaporthe grisea .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes .
| | Author: Lee SK Song MY Seo YS Kim HK Ko S Cao PJ Suh JP Yi G Roh JH Lee S An G Hahn TR Wang GL Ronald P Jeon JS | | Journal: Genetics Citation: V : 181 P : 1627-38 Year: 2009 Type: In-Process | | Literature: oryza Field: title Doc ID: pub19153255 Accession (PMID): 19153255 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice .
| | Author: Gupta SK Rai AK Kanwar SS Chand D Singh NK Sharma TR | | Journal: J Exp Bot Citation: V : 63 P : 757-72 Year: 2012 Type: In-Data-Review | | Literature: oryza Field: title Doc ID: pub22058403 Accession (PMID): 22058403 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: The identification of Pi50 ( t ) , a new member of the rice blast resistance Pi2/Pi9 multigene family .
| | Author: Zhu X Chen S Yang J Zhou S Zeng L Han J Su J Wang L Pan Q | | Journal: Theor Appl Genet Citation: V : 124 P : 1295-304 Year: 2012 Type: In-Process | | Literature: oryza Field: title Doc ID: pub22270148 Accession (PMID): 22270148 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: The identification of Pi50 ( t ) , a new member of the rice blast resistance Pi2/Pi9 multigene family .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: Identification of the novel recessive gene pi55 ( t ) conferring resistance to Magnaporthe oryzae .
| | Author: He X Liu X Wang L Wang L Lin F Cheng Y Chen Z Liao Y Pan Q | | Journal: Sci China Life Sci Citation: V : 55 P : 141-9 Year: 2012 Type: MEDLINE | | Literature: oryza Field: title Doc ID: pub22415685 Accession (PMID): 22415685 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Identification of the novel recessive gene pi55 ( t ) conferring resistance to Magnaporthe oryzae .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: A novel blast resistance gene , Pi54rh cloned from wild species of rice , Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae .
| | Author: Das A Soubam D Singh PK Thakur S Singh NK Sharma TR | | Journal: Funct Integr Genomics Citation: V : 12 P : 215-28 Year: 2012 Type: In-Process | | Literature: oryza Field: title Doc ID: pub22592658 Accession (PMID): 22592658 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: A novel blast resistance gene , Pi54rh cloned from wild species of rice , Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
Score: 1.00 |
|---|
| Title: Molecular mapping of the blast resistance genes Pi2-1 and Pi51 ( t ) in the durably resistant rice Tianjingyeshengdao .
| | Author: Wang Y Wang D Deng X Liu J Sun P Liu Y Huang H Jiang N Kang H Ning Y Wang Z Xiao Y Liu X Liu E Dai L Wang GL | | Journal: Phytopathology Citation: V : 102 P : 779-86 Year: 2012 Type: In-Process | | Literature: oryza Field: title Doc ID: pub22779744 Accession (PMID): 22779744 | Matching Sentences:
[ Sen. 1, subscore: 1.00 ]: Molecular mapping of the blast resistance genes Pi2-1 and Pi51 ( t ) in the durably resistant rice Tianjingyeshengdao .
| | Supplemental links/files: reference in endnote online text related articles pubmed citation | |
